Create and fix metadata

.JuliaFormatter.toml

@@ -0,0 +1,10 @@
+style = "sciml"
+margin = 80
+remove_extra_newlines = true
+always_use_return = true
+trailing_comma = false
+join_lines_based_on_source = true
+yas_style_nesting = true
+always_for_in = true
+annotate_untyped_fields_with_any = true
+normalize_line_endings = "unix"

.gitignore

@@ -0,0 +1,2 @@
+Manifest.toml
+.vscode

.zenodo.json

@@ -1,12 +1,18 @@
 {
     "title": "ClimatePref.jl",
-    "description": "Package containing code for 'Strong phylogenetic signals in global plant climate envelopes'",
     "upload_type": "software",
     "creators": [
         {
-            "affiliation": "Biomathematics and Statistics Scotland",
             "name": "Harris, Claire",
-            "orcid": "0000-0003-0852-2340"
+            "orcid": "0000-0003-0852-2340",
+            "affiliation": "Biomathematics and Statistics Scotland",
+            "ror": "03jwrz939"
+        },
+        {
+            "name": "Reeve, Richard",
+            "orcid": "0000-0003-2589-8091",
+            "affiliation": "University of Glasgow",
+            "ror": "00vtgdb53"
         }
     ],
     "access_right": "open",
@@ -15,14 +21,10 @@
         {
             "scheme": "url",
             "identifier": "https://github.com/boydorr/ClimatePref.jl",
-            "relation": "isIdenticalTo"
+            "relation": "isOriginalFormOf"
         }
     ],
     "keywords": [
-        "climate",
-        "plants",
-        "phylogenetics",
-        "julia",
-        "ecology"
+        "julia"
     ]
-}
+}

LICENSE

@@ -0,0 +1,9 @@
+Copyright (c) 2018-2024 Claire Harris and Richard Reeve 
+
+Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer.
+
+2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution.
+
+THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Project.toml

@@ -1,6 +1,8 @@
 name = "ClimatePref"
 uuid = "fca47ed3-1eba-4660-ae9b-41dfe9aa8fbc"
-version = "0.1.0"
+license = "BSD-2-Clause"
+authors = ["Claire Harris", "Richard Reeve <[email protected]>"]
+version = "1.0.1"
 
 [deps]
 ArchGDAL = "c9ce4bd3-c3d5-55b8-8973-c0e20141b8c3"
@@ -35,26 +37,44 @@ Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d"
 ArchGDAL = "0.5"
 AxisArrays = "0.4"
 Calculus = "0.5"
-DataFrames = "0.20 - 0.22"
+DataFrames = "0.20,0.21,0.22,1"
 GDAL = "1.1"
 GLM = "1.3"
-IndexedTables = "0.7 - 1.0"
+IndexedTables = "0.12,1"
 Interpolations = "0.12"
-JuliaDB = "0.12"
+JuliaDB = "0.12,0.13"
 JuliaDBMeta = "0.4"
-NetCDF = "0.10"
+NetCDF = "0.11"
 Nullables = "1.0"
 OnlineStats = "0.21"
 Optim = "1.2"
-Phylo = "0.4"
-PhyloNetworks = "0.11"
+Phylo = "0.4,0.5"
+PhyloNetworks = "0.11,0.12,0.13,0.14,0.15,0.16"
 Plots = "0.28"
+RCall = "0.13,0.14"
+Random = "1"
 RecipesBase = "0.7"
 Requires = "1.0, 1.1"
+Statistics = "1"
 StatsBase = "0.32"
 Unitful = "1.4"
 julia = "1.6"
 
+[[author_details]]
+name = "Claire Harris"
+orcid = "0000-0003-0852-2340"
+email = "[email protected]"
+
+    [[author_details.affiliation]]
+    ror = "03jwrz939"
+[[author_details]]
+name = "Richard Reeve"
+orcid = "0000-0003-2589-8091"
+email = "[email protected]"
+
+    [[author_details.affiliation]]
+    ror = "00vtgdb53"
+
 [extras]
 Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"

codemeta.json

@@ -0,0 +1,58 @@
+{
+    "@context": "https://w3id.org/codemeta/3.0",
+    "type": "SoftwareSourceCode",
+    "applicationCategory": "ecology",
+    "programmingLanguage": "julia",
+    "developmentStatus": "active",
+    "codeRepository": "https://github.com/boydorr/ClimatePref.jl",
+    "name": "ClimatePref.jl",
+    "issueTracker": "https://github.com/boydorr/ClimatePref.jl/issues",
+    "readme": "https://github.com/boydorr/ClimatePref.jl/blob/main/README.md",
+    "dateCreated": "2018-01-26",
+    "operatingSystem": [
+        "Linux",
+        "Windows",
+        "macOS"
+    ],
+    "version": "v1.0.1",
+    "dateModified": "2024-10-15",
+    "datePublished": "2024-10-15",
+    "downloadUrl": "https://github.com/boydorr/ClimatePref.jl/archive/refs/tags/v1.0.1.tar.gz",
+    "license": "https://spdx.org/licenses/BSD-2-Clause",
+    "author": [
+        {
+            "type": "Person",
+            "givenName": "Claire",
+            "familyName": "Harris",
+            "id": "https://orcid.org/0000-0003-0852-2340",
+            "affiliation": [
+                {
+                    "type": "Organization",
+                    "name": "Biomathematics and Statistics Scotland",
+                    "identifier": "https://ror.org/03jwrz939"
+                }
+            ]
+        },
+        {
+            "type": "Person",
+            "givenName": "Richard",
+            "familyName": "Reeve",
+            "email": "[email protected]",
+            "id": "https://orcid.org/0000-0003-2589-8091",
+            "affiliation": [
+                {
+                    "type": "Organization",
+                    "name": "University of Glasgow",
+                    "identifier": "https://ror.org/00vtgdb53"
+                }
+            ]
+        }
+    ],
+    "continuousIntegration": "https://github.com/boydorr/ClimatePref.jl/actions/workflows/testing.yaml",
+    "codemeta:contIntegration": {
+        "id": "https://github.com/boydorr/ClimatePref.jl/actions/workflows/testing.yaml"
+    },
+    "keywords": [
+        "julia"
+    ]
+}