PN_KC

Code for the PN-KC paper(Zheng et al. 2020)

python-igraph is required to run the code in connectivity
Some code will require pyMaid
modeling is modified from code kindly provided by Ashok Litwin-Kumar (Litwin-Kumar et al. Neuron 2017; Eichler et al. Nature 2017)

To run,

Download data from: https://doi.org/10.6084/m9.figshare.19092242.v1
first run these script to import functions and load data: %run setup.py, %run funs.py, %run load_data.py
then run other scripts to produce figures of the paper

Name		Name	Last commit message	Last commit date
Latest commit History 59 Commits
modeling		modeling
mushroom_2to3		mushroom_2to3
tables		tables
.DS_Store		.DS_Store
.gitignore		.gitignore
Hemibrain_SFig5_E-I.py		Hemibrain_SFig5_E-I.py
Input_representation_Fig2_Fig3G_I.py		Input_representation_Fig2_Fig3G_I.py
KC_subtypes_SFig4A-C_SFig5B-D.py		KC_subtypes_SFig4A-C_SFig5B-D.py
NBLAST_SFig6D-F_hemibrain_PNKC_PN_NBLAST_tangle.R		NBLAST_SFig6D-F_hemibrain_PNKC_PN_NBLAST_tangle.R
README.md		README.md
SFig1.ipynb		SFig1.ipynb
SFig2H_hiarachical_clustering.py		SFig2H_hiarachical_clustering.py
SFig3-covariance_analysis.py		SFig3-covariance_analysis.py
SFig4N_remve_extra_claws.py		SFig4N_remve_extra_claws.py
SFig5-J-L_process_Caron_data.py		SFig5-J-L_process_Caron_data.py
SFig7G.py		SFig7G.py
SFig7_B-F_PCA.py		SFig7_B-F_PCA.py
SFig_4L-underconvergent_KC_claws.py		SFig_4L-underconvergent_KC_claws.py
STable_201001_bouton_claw_table.csv		STable_201001_bouton_claw_table.csv
cond_matrices_Fig3B_SFig2C_Fig4B-C_Fig5D-F.py		cond_matrices_Fig3B_SFig2C_Fig4B-C_Fig5D-F.py
funs.py		funs.py
load_data.py		load_data.py
process_caron_data_v2.py		process_caron_data_v2.py
setup.py		setup.py
test.ipynb		test.ipynb

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