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bluenote-1577 authored Mar 19, 2024
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Expand Up @@ -124,6 +124,10 @@ For common use cases and fast explanations, see the above [cookbook](https://git
1. #### [Sylph's TSV output and containment ANI explanation](https://github.com/bluenote-1577/sylph/wiki/Output-format)
2. #### [Incoporating custom taxonomies to get CAMI-like or MetaPhlAn-like outputs](https://github.com/bluenote-1577/sylph/wiki/Integrating-taxonomic-information-with-sylph)

### [sylph-utils](https://github.com/bluenote-1577/sylph-utils)

For incoporating taxonomy and manipulating output formats, see the [sylph-utils repository](https://github.com/bluenote-1577/sylph-utils).

## Citing sylph

Jim Shaw and Yun William Yu. Metagenome profiling and containment estimation through abundance-corrected k-mer sketching with sylph (2023). bioRxiv.
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