Add a samtools quickcheck task #332
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
This is designed to enable us to more quickly catch problematic BAMs, and fail earlier in the pipeline than after we've wasted some significant compute time.
|
A rapid check for truncation is indeed quite a good thing. This happens with some regularity with files supplied by colleagues. |
rhpvorderman
approved these changes
Mar 25, 2025
hexylena
force-pushed
the
samtools-quickcheck
branch
from
846cab2 to
47efde7
Compare
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This is designed to enable us to more quickly catch problematic BAMs, and fail earlier in the pipeline than after we've wasted some significant compute time.
Checklist
parameter_metawas added/updated (if required).