structural-variantcalling

This repository contains the Biowdl workflow for structural variant calling.

Documentation

You can find the documentation here.

This pipeline is part of Biowdl, developed by the SASC team.

For any question related to this workflow, please use the github issue tracker or contact the SASC team directly at: sasc@lumc.nl.

Name	Name	Last commit message	Last commit date
Latest commit rhpvorderman setting next version May 2, 2023 a91b1d6 · May 2, 2023 History 335 Commits
.github	.github	Use ci_tests file	Feb 15, 2022
docs	docs	Update documentation	May 2, 2023
scripts @ 4142daa	scripts @ 4142daa	update inputs docs	Jan 27, 2023
tasks @ 0ed76c1	tasks @ 0ed76c1	update changelog	May 2, 2023
tests	tests	update clever path in tests	Nov 15, 2022
.gitignore	.gitignore	modified .gitignore	Feb 6, 2020
.gitmodules	.gitmodules	add scripts submodule	Feb 11, 2020
CHANGELOG.md	CHANGELOG.md	Set changelog to a stable version	May 2, 2023
LICENSE	LICENSE	Initial commit	Mar 12, 2019
README.md	README.md	add README	Mar 12, 2019
VERSION	VERSION	setting next version	May 2, 2023
ci_tests.json	ci_tests.json	Use ci_tests file	Feb 15, 2022
pytest.ini	pytest.ini	add pytest.ini	Jul 4, 2022
requirements-test.txt	requirements-test.txt	add requirements-test.txt	Feb 13, 2020
somatic.wdl	somatic.wdl	add sv typing for gridss output in somatic workflow	Feb 6, 2023
structural-variantcalling.wdl	structural-variantcalling.wdl	fix lint issue in germline workflow	Jan 25, 2023