Add seq2squiggle recipe (#53053)

* Add seq2squiggle recipe

* Change pod5 to lib-pod5 since pod5 not available in conda

* Move seq2squiggle in recipe directory

* Add run_exports

* Switch back to pod5

* Add ont_vbz_hdf_plugin since pod5 requires these

* Replace ont_vbz_hdf_plugin with hdf5plugin

* Change back to ont_vbz_hdf_plugin

* Remove pip check

recipes/seq2squiggle/meta.yaml

@@ -0,0 +1,61 @@
+{% set name = "seq2squiggle" %}
+{% set version = "0.3.0" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://pypi.org/packages/source/{{ name[0] }}/{{ name }}/seq2squiggle-{{ version }}.tar.gz
+  sha256: d1ab02b5f349c850aadb2057113342fe45eda5f5f84e600ed70db5e4210ab3c1
+
+build:
+  entry_points:
+    - seq2squiggle = seq2squiggle.seq2squiggle:main
+  noarch: python
+  script: {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation
+  run_exports:
+    - {{ pin_subpackage('seq2squiggle', max_pin="x.x") }}
+  number: 0
+
+requirements:
+  host:
+    - python >=3.10,<4.0
+    - poetry-core
+    - pip
+  run:
+    - python >=3.10.0,<4.0.0
+    - appdirs >=1.4.4,<2.0.0
+    - pytorch >=2.3.1,<3.0.0
+    - lightning >=2.2.5,<3.0.0
+    - pod5 >=0.3.12,<0.4.0
+    - pygithub >=2.3.0,<3.0.0
+    - pyyaml >=6.0.1,<7.0.0
+    - tqdm >=4.66.2,<5.0.0
+    - numpy >=1.26.4,<2.0.0
+    - rich-click >=1.8.2,<2.0.0
+    - wandb >=0.16.3,<0.17.0
+    - scikit-learn >=1.4.0,<2.0.0
+    - matplotlib-base >=3.9.0,<4.0.0
+    - pysam >=0.22.0,<0.23.0
+    - prettytable >=3.9.0,<4.0.0
+    - transformers >=4.41.2,<5.0.0
+    - numba >=0.59.0,<0.60.0
+    - pyslow5 >=1.1.0,<2.0.0
+    - ont_vbz_hdf_plugin >=1.0.1
+
+test:
+  imports:
+    - seq2squiggle
+  commands:
+    - seq2squiggle --help
+
+about:
+  home: https://github.com/ZKI-PH-ImageAnalysis/seq2squiggle
+  summary: End-to-end simulation of nanopore sequencing signals with feed-forward transformers
+  license: MIT
+  license_file: LICENSE
+
+extra:
+  recipe-maintainers:
+    - denisbeslic