fix: add biomart mirror failover and improve ortholog mapping #425
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- Add biomaRt.useEnsembl() helper function that tries multiple mirrors (www, useast, asia) before failing - Update getHumanOrtholog() to always try biomart as fallback when unmapped genes remain - Remove excessive debug logging statements - Fix multi-omics probe annotation to handle empty symbols Co-Authored-By: Claude Opus 4.5 <[email protected]>
zitoa
approved these changes
Jan 19, 2026
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Summary
biomaRt.useEnsembl()helper function that tries multiple Ensembl mirrors (www, useast, asia) before failinggetHumanOrtholog()to always try biomart as fallback when unmapped genes remainTest plan
make test filter=annot🤖 Generated with Claude Code