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Upgrade openspecimen to v10.1.RC1 #21

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Upgrade openspecimen to v10.1.RC1 #21

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105e2dc
chore: upgrade openspecimen to v10.1.RC1
jungwire Apr 10, 2024
8034166
chore: switch from prerelease of dockeer img to normal
jungwire Apr 11, 2024
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7 changes: 3 additions & 4 deletions appinfo.json
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Original file line number Diff line number Diff line change
@@ -1,13 +1,12 @@
{
"name": "OpenSpecimen",
"short_name": "OpenSpecimen",
"version": "v9.0.RC2",
"description": "OpenSpecimen Version 9.0.RC2",
"version": "v10.1.RC1",
"description": "OpenSpecimen Version 10.1.RC1",
"catalogue_url": "http://biobankapps.com/software/view?id=26",
"application_url": "https://www.openspecimen.org/",
"tags": ["Sample Management", "BIMS"],
"application_documentation_url": "https://openspecimen.atlassian.net/wiki/spaces/CAT",

"instance_information": "<p> OpenSpecimen is a highly Configurable Biospecimen Management System, which enables to track the Complete Lifecycle of your Biospecimen Inventory from Collection to Utilization. <br>user: admin </br> <br> password: Login@123>br/></p>"
"instance_information": "<p> OpenSpecimen is a highly Configurable Biospecimen Management System, which enables to track the Complete Lifecycle of your Biospecimen Inventory from Collection to Utilization. <p>To login use: </p><p>user:admin </p><p>password:Login@123 </p>"

}
Binary file removed configs/openspecimen/scripts/adduser.jar
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15 changes: 0 additions & 15 deletions configs/openspecimen/scripts/defaultvar.sh
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17 changes: 0 additions & 17 deletions configs/openspecimen/scripts/entrypoint.sh
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182 changes: 0 additions & 182 deletions configs/openspecimen/scripts/waitforit.sh
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8 changes: 4 additions & 4 deletions docker-compose.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -24,7 +24,7 @@ services:
- SYS_NICE

local-openspecimen-web:
image: bibbox/openspecimen:9-0-RC2
image: bibbox/openspecimen:v10.1.RC1
container_name: local-openspecimen-web
user: tomcat
restart: unless-stopped
Expand All @@ -34,16 +34,16 @@ services:
- local-openspecimen-db:openspecimen-db
environment:
- DATABASE_HOST=openspecimen-db
- DATABASE_PORT=3306
- MYSQL_ROOT_PASSWORD=openspecimen
- MYSQL_DATABASE=openspecimen
- MYSQL_USER=openspecimen
- MYSQL_PASSWORD=openspecimen
depends_on:
- local-openspecimen-db
volumes:
- ./data/os-data:/var/lib/tomcat9/openspecimen/data
- ./data/os-plugins:/var/lib/tomcat9/openspecimen/plugins
- ./data/os-data:/var/lib/openspecimen/data
- ./data/os-plugins:/var/lib/openspecimen/plugins
- ./configs/openspecimen/ROOT:/var/lib/tomcat9/webapps/ROOT
- ./configs/openspecimen/scripts/entrypoint.sh:/opt/scripts/entrypoint.sh
ports:
- "9000:8080"
8 changes: 4 additions & 4 deletions docker-compose.yml.template
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Expand Up @@ -22,7 +22,7 @@ services:
- ./configs/openspecimen.cnf:/etc/mysql/conf.d/openspecimen.cnf:ro

§§INSTANCE-openspecimen-web:
image: bibbox/openspecimen:9-0-RC2
image: bibbox/openspecimen:v10.1.RC1
container_name: §§INSTANCE-openspecimen-web
restart: unless-stopped
user: tomcat
Expand All @@ -32,6 +32,7 @@ services:
- §§INSTANCE-openspecimen-db:openspecimen-db
environment:
- DATABASE_HOST=openspecimen-db
- DATABASE_PORT=3306
- MYSQL_ROOT_PASSWORD=thispasswordisneverusededoutsidethecontainer
- MYSQL_DATABASE=openspecimen
- MYSQL_USER=§§MYSQL_DATABASE_USER
Expand All @@ -44,9 +45,8 @@ services:
depends_on:
- §§INSTANCE-openspecimen-db
volumes:
- ./data/os-data:/var/lib/tomcat9/openspecimen/data
- ./data/os-plugins:/var/lib/tomcat9/openspecimen/plugins
- ./data/os-data:/var/lib/openspecimen/data
- ./data/os-plugins:/var/lib/openspecimen/plugins
- ./configs/openspecimen/ROOT:/var/lib/tomcat9/webapps/ROOT
- ./configs/openspecimen/scripts/entrypoint.sh:/opt/scripts/entrypoint.sh
ports:
- "9000:8080"