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@bhklab

BHKLAB

The Haibe-Kains Laboratory @ Princess Margaret Cancer Centre
README.md

Mission

Our overarching goal consists of developing cutting-edge computational tools and predictive models to identify new cancer vulnerabilities and improve the way precision oncology is delivered to patients.

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  1. PharmacoGx PharmacoGx Public

    R package to analyze large-scale pharmacogenomic datasets.

    R 67 26

  2. med-imagetools med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    Python 39 9

  3. CoreGx CoreGx Public

    Shared code for both PharmacoGx and RadioGx

    R 2 3

  4. AnnotationGx AnnotationGx Public

    An R package to query various bio/chem-informatics databases APIs to construct annotation files.

    R 1 1

  5. readii readii Public

    Radiomic Extraction and Analysis for DICOM Images (READII)

    Jupyter Notebook 3

  6. orcestra-downloader orcestra-downloader Public

    Python

Repositories

Showing 10 of 185 repositories
  • readii-fmcib Public

    Taming the unicorn that is FMCIB

    bhklab/readii-fmcib’s past year of commit activity
    Python 1 MIT 0 2 0 Updated Jan 3, 2025
  • PredictioR Public
    bhklab/PredictioR’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Jan 3, 2025
  • SignatureSets Public

    Compendium of published molecular signatures

    bhklab/SignatureSets’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Jan 3, 2025
  • med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    bhklab/med-imagetools’s past year of commit activity
    Python 39 MIT 9 17 3 Updated Jan 2, 2025
  • handbook Public

    Lab Handbook For BHKLab

    bhklab/handbook’s past year of commit activity
    2 0 25 (2 issues need help) 2 Updated Jan 2, 2025
  • readii Public

    Radiomic Extraction and Analysis for DICOM Images (READII)

    bhklab/readii’s past year of commit activity
    Jupyter Notebook 3 MIT 0 25 (1 issue needs help) 2 Updated Jan 1, 2025
  • orcestra-downloader Public
    bhklab/orcestra-downloader’s past year of commit activity
    Python 0 MIT 0 0 1 Updated Jan 1, 2025
  • ORCESTRA Public

    ORCESTRA is a new web application that enables users to search, request and manage pharmacogenomic datasets (PSets).

    bhklab/ORCESTRA’s past year of commit activity
    JavaScript 4 Apache-2.0 2 15 8 Updated Dec 31, 2024
  • PredictIO_EcoTyper Public
    bhklab/PredictIO_EcoTyper’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 24, 2024
  • ispy-readii Public

    Running READII on the I-SPY cohort for radiogenomic analysis.

    bhklab/ispy-readii’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Dec 16, 2024
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