Merge branch '9.x' into improvement/migrate-to-fhir-core

CHANGELOG.md

@@ -1,6 +1,32 @@
 # Change Log
 All notable changes to this project will be documented in this file.
 
+## 9.3.0
+
+### Core
+- Introduce 'sourceOf' dependency scope (#1327)
+  * Special scope marker to indicate that a resource is used as a source of another
+  * When versioning a resource, all sourceOf dependencies will be versioned with it at the same time
+
+### SNOMED CT
+- Introduce `snomed.mrcm.allowedDataAttributesExpression` and `snomed.mrcm.allowedObjectAttributesExpression` configurations (#1325)
+  * By default they use the corresponding attribute concept's descendants from SNOMED CT International Edition
+  * They can be changed to accommodate additional requirements (e.g. allow additional hierarchies to be used as relationship types)
+
+### Validation
+- Validation threading changes (#1320)
+  * Introduce `validation.workerPoolSize` configuration setting
+  * Deprecate `validation.numberOfValidationThreads` configuration setting
+  * Increased allowed maximum pool size to `99`
+  * A more reasonable default pool size is computed based on the available resources on the current node
+
+### Bugs/Improvements
+- [core] improve detection of non-connected cycles in SimpleTaxonomyGraph (#1322)
+- [api] fixed an issue where retrieving validation results could result in a server error (#1310)
+- [snomed] ensure that concrete data type reference sets can be created for concept component types (e4525b1)
+- [snomed] fixen an issue where language configuration merging could result in serialization error (796f1f4)
+- [classification] increase page size when gathering information for classification runs (ac34e31)
+
 ## 9.2.3
 
 ### Bugs/Improvements

cis/com.b2international.snowowl.snomed.cis.feature/feature.xml

@@ -2,7 +2,7 @@
 <feature
       id="com.b2international.snowowl.snomed.cis.feature"
       label="Snow Owl SNOMED CT CIS Feature"
-      version="9.2.4.qualifier"
+      version="9.3.1.qualifier"
       provider-name="B2i Healthcare">
 
    <description url="http://www.example.com/description">

cis/com.b2international.snowowl.snomed.cis.feature/pom.xml

@@ -7,7 +7,7 @@
 	<parent>
 		<groupId>com.b2international.snowowl</groupId>
 		<artifactId>cis-parent</artifactId>
-		<version>9.2.4-SNAPSHOT</version>
+		<version>9.3.1-SNAPSHOT</version>
 	</parent>
 	<artifactId>com.b2international.snowowl.snomed.cis.feature</artifactId>
 	<packaging>eclipse-feature</packaging>

cis/com.b2international.snowowl.snomed.cis.product/pom.xml

@@ -8,7 +8,7 @@
 	<parent>
 		<groupId>com.b2international.snowowl</groupId>
 		<artifactId>cis-parent</artifactId>
-		<version>9.2.4-SNAPSHOT</version>
+		<version>9.3.1-SNAPSHOT</version>
 	</parent>
 
 	<properties>

cis/com.b2international.snowowl.snomed.cis.product/snow-owl-cis.product

@@ -1,7 +1,7 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <?pde version="3.5"?>
 
-<product name="Snow Owl CIS" uid="com.b2international.snowowl.snomed.cis.product" id="com.b2international.snowowl.server.product.product" application="com.b2international.snowowl.server.product.SnowOwlServer" version="9.2.4.qualifier" useFeatures="true" includeLaunchers="true">
+<product name="Snow Owl CIS" uid="com.b2international.snowowl.snomed.cis.product" id="com.b2international.snowowl.server.product.product" application="com.b2international.snowowl.server.product.SnowOwlServer" version="9.3.1.qualifier" useFeatures="true" includeLaunchers="true">
 
    <configIni use="default">
    </configIni>

cis/com.b2international.snowowl.snomed.cis.rest/META-INF/MANIFEST.MF

@@ -2,7 +2,7 @@ Manifest-Version: 1.0
 Bundle-ManifestVersion: 2
 Bundle-Name: Snow Owl SNOMED CT Component Identifier Service
 Bundle-SymbolicName: com.b2international.snowowl.snomed.cis.rest;singleton:=true
-Bundle-Version: 9.2.4.qualifier
+Bundle-Version: 9.3.1.qualifier
 Bundle-Vendor: B2i Healthcare
 Automatic-Module-Name: com.b2international.snowowl.snomed.cis.rest
 Bundle-RequiredExecutionEnvironment: JavaSE-17

cis/com.b2international.snowowl.snomed.cis.rest/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>com.b2international.snowowl</groupId>
 		<artifactId>cis-parent</artifactId>
-		<version>9.2.4-SNAPSHOT</version>
+		<version>9.3.1-SNAPSHOT</version>
 	</parent>
 
 	<artifactId>com.b2international.snowowl.snomed.cis.rest</artifactId>

cis/com.b2international.snowowl.snomed.cis/META-INF/MANIFEST.MF

@@ -2,7 +2,7 @@ Manifest-Version: 1.0
 Bundle-ManifestVersion: 2
 Bundle-Name: Snow Owl SNOMED CT CIS
 Bundle-SymbolicName: com.b2international.snowowl.snomed.cis;singleton:=true
-Bundle-Version: 9.2.4.qualifier
+Bundle-Version: 9.3.1.qualifier
 Bundle-Vendor: B2i Healthcare
 Automatic-Module-Name: com.b2international.snowowl.snomed.cis
 Bundle-RequiredExecutionEnvironment: JavaSE-17

cis/com.b2international.snowowl.snomed.cis/pom.xml

@@ -7,7 +7,7 @@
 	<parent>
 		<groupId>com.b2international.snowowl</groupId>
 		<artifactId>cis-parent</artifactId>
-		<version>9.2.4-SNAPSHOT</version>
+		<version>9.3.1-SNAPSHOT</version>
 	</parent>
 	<artifactId>com.b2international.snowowl.snomed.cis</artifactId>
 	<packaging>eclipse-plugin</packaging>

cis/pom.xml

@@ -9,7 +9,7 @@
 	<parent>
 		<groupId>com.b2international.snowowl</groupId>
 		<artifactId>snowowl-parent</artifactId>
-		<version>9.2.4-SNAPSHOT</version>
+		<version>9.3.1-SNAPSHOT</version>
 	</parent>
 
 	<modules>

commons/com.b2international.collections.api/META-INF/MANIFEST.MF

@@ -2,7 +2,7 @@ Manifest-Version: 1.0
 Bundle-ManifestVersion: 2
 Bundle-Name: Collections API
 Bundle-SymbolicName: com.b2international.collections.api;singleton:=true
-Bundle-Version: 9.2.4.qualifier
+Bundle-Version: 9.3.1.qualifier
 Bundle-Vendor: B2i Healthcare
 Bundle-RequiredExecutionEnvironment: JavaSE-17
 Bundle-ActivationPolicy: lazy

commons/com.b2international.collections.api/pom.xml

@@ -4,7 +4,7 @@
 	<parent>
 		<groupId>com.b2international.snowowl</groupId>
 		<artifactId>commons-parent</artifactId>
-		<version>9.2.4-SNAPSHOT</version>
+		<version>9.3.1-SNAPSHOT</version>
 	</parent>
 	<artifactId>com.b2international.collections.api</artifactId>
 	<packaging>eclipse-plugin</packaging>

commons/com.b2international.collections.fastutil/META-INF/MANIFEST.MF

@@ -2,7 +2,7 @@ Manifest-Version: 1.0
 Bundle-ManifestVersion: 2
 Bundle-Name: Fastutil based implementation of Collections API
 Bundle-SymbolicName: com.b2international.collections.fastutil;singleton:=true
-Bundle-Version: 9.2.4.qualifier
+Bundle-Version: 9.3.1.qualifier
 Bundle-RequiredExecutionEnvironment: JavaSE-17
 Fragment-Host: com.b2international.collections.api
 Export-Package: com.b2international.collections,

commons/com.b2international.collections.fastutil/pom.xml

@@ -4,7 +4,7 @@
 	<parent>
 		<groupId>com.b2international.snowowl</groupId>
 		<artifactId>commons-parent</artifactId>
-		<version>9.2.4-SNAPSHOT</version>
+		<version>9.3.1-SNAPSHOT</version>
 	</parent>
 	<artifactId>com.b2international.collections.fastutil</artifactId>
 	<packaging>eclipse-plugin</packaging>

commons/com.b2international.collections.jackson/META-INF/MANIFEST.MF

@@ -2,7 +2,7 @@ Manifest-Version: 1.0
 Bundle-ManifestVersion: 2
 Bundle-Name: Jackson Module for Primitive Collections API
 Bundle-SymbolicName: com.b2international.collections.jackson;singleton:=true
-Bundle-Version: 9.2.4.qualifier
+Bundle-Version: 9.3.1.qualifier
 Bundle-RequiredExecutionEnvironment: JavaSE-17
 Bundle-ActivationPolicy: lazy
 Require-Bundle: com.b2international.collections.api,

commons/com.b2international.collections.jackson/pom.xml

@@ -4,7 +4,7 @@
 	<parent>
 		<groupId>com.b2international.snowowl</groupId>
 		<artifactId>commons-parent</artifactId>
-		<version>9.2.4-SNAPSHOT</version>
+		<version>9.3.1-SNAPSHOT</version>
 	</parent>
 	<artifactId>com.b2international.collections.jackson</artifactId>
 	<packaging>eclipse-plugin</packaging>

commons/com.b2international.commons.test/META-INF/MANIFEST.MF

@@ -2,7 +2,7 @@ Manifest-Version: 1.0
 Bundle-ManifestVersion: 2
 Bundle-Name: B2i Commons Test
 Bundle-SymbolicName: com.b2international.commons.test
-Bundle-Version: 9.2.4.qualifier
+Bundle-Version: 9.3.1.qualifier
 Bundle-Vendor: B2i Healthcare
 Bundle-RequiredExecutionEnvironment: JavaSE-17
 Fragment-Host: com.b2international.commons;bundle-version="3.9.0"

commons/com.b2international.commons.test/pom.xml

@@ -6,7 +6,7 @@
 	<parent>
 		<groupId>com.b2international.snowowl</groupId>
 		<artifactId>commons-parent</artifactId>
-		<version>9.2.4-SNAPSHOT</version>
+		<version>9.3.1-SNAPSHOT</version>
 	</parent>
 	<artifactId>com.b2international.commons.test</artifactId>
 	<packaging>eclipse-test-plugin</packaging>

commons/com.b2international.commons/META-INF/MANIFEST.MF

@@ -2,7 +2,7 @@ Manifest-Version: 1.0
 Bundle-ManifestVersion: 2
 Bundle-Name: B2i Commons
 Bundle-SymbolicName: com.b2international.commons;singleton:=true
-Bundle-Version: 9.2.4.qualifier
+Bundle-Version: 9.3.1.qualifier
 Bundle-Vendor: B2i Healthcare
 Bundle-RequiredExecutionEnvironment: JavaSE-17
 Export-Package: com.b2international.commons,

commons/com.b2international.commons/pom.xml

@@ -7,7 +7,7 @@
 	<parent>
 		<groupId>com.b2international.snowowl</groupId>
 		<artifactId>commons-parent</artifactId>
-		<version>9.2.4-SNAPSHOT</version>
+		<version>9.3.1-SNAPSHOT</version>
 	</parent>
 	<artifactId>com.b2international.commons</artifactId>
 	<packaging>eclipse-plugin</packaging>

commons/com.b2international.groovy/pom.xml

@@ -4,7 +4,7 @@
 	<parent>
 		<groupId>com.b2international.snowowl</groupId>
 		<artifactId>commons-parent</artifactId>
-		<version>9.2.4-SNAPSHOT</version>
+		<version>9.3.1-SNAPSHOT</version>
 	</parent>
 	<artifactId>com.b2international.groovy</artifactId>
 	<packaging>eclipse-plugin</packaging>

commons/com.b2international.index.es8/META-INF/MANIFEST.MF

@@ -2,7 +2,7 @@ Manifest-Version: 1.0
 Bundle-ManifestVersion: 2
 Bundle-Name: Elasticsearch 8 Index Client Module
 Bundle-SymbolicName: com.b2international.index.es8;singleton:=true
-Bundle-Version: 9.2.4.qualifier
+Bundle-Version: 9.3.1.qualifier
 Bundle-Vendor: B2i Healthcare
 Automatic-Module-Name: com.b2international.index.es8
 Bundle-RequiredExecutionEnvironment: JavaSE-17

commons/com.b2international.index.es8/pom.xml

@@ -7,7 +7,7 @@
 	<parent>
 		<groupId>com.b2international.snowowl</groupId>
 		<artifactId>commons-parent</artifactId>
-		<version>9.2.4-SNAPSHOT</version>
+		<version>9.3.1-SNAPSHOT</version>
 	</parent>
 
 	<properties>

commons/com.b2international.index.test.tools/META-INF/MANIFEST.MF

@@ -2,7 +2,7 @@ Manifest-Version: 1.0
 Bundle-ManifestVersion: 2
 Bundle-Name: Test tools for tests based on Index API
 Bundle-SymbolicName: com.b2international.index.test.tools;singleton:=true
-Bundle-Version: 9.2.4.qualifier
+Bundle-Version: 9.3.1.qualifier
 Bundle-RequiredExecutionEnvironment: JavaSE-17
 Bundle-ActivationPolicy: lazy
 Require-Bundle: com.b2international.index,

commons/com.b2international.index.test.tools/pom.xml

@@ -3,7 +3,7 @@
 	<parent>
 		<groupId>com.b2international.snowowl</groupId>
 		<artifactId>commons-parent</artifactId>
-		<version>9.2.4-SNAPSHOT</version>
+		<version>9.3.1-SNAPSHOT</version>
 	</parent>
 	<artifactId>com.b2international.index.test.tools</artifactId>
 	<packaging>eclipse-plugin</packaging>

commons/com.b2international.index.tests/META-INF/MANIFEST.MF

@@ -2,7 +2,7 @@ Manifest-Version: 1.0
 Bundle-ManifestVersion: 2
 Bundle-Name: Generic Index API Test Suite
 Bundle-SymbolicName: com.b2international.index.tests;singleton:=true
-Bundle-Version: 9.2.4.qualifier
+Bundle-Version: 9.3.1.qualifier
 Bundle-Vendor: B2i Healthcare
 Bundle-RequiredExecutionEnvironment: JavaSE-17
 Bundle-ActivationPolicy: lazy

commons/com.b2international.index.tests/pom.xml

@@ -3,7 +3,7 @@
 	<parent>
 		<groupId>com.b2international.snowowl</groupId>
 		<artifactId>commons-parent</artifactId>
-		<version>9.2.4-SNAPSHOT</version>
+		<version>9.3.1-SNAPSHOT</version>
 	</parent>
 	<artifactId>com.b2international.index.tests</artifactId>
 	<packaging>eclipse-test-plugin</packaging>

commons/com.b2international.index/META-INF/MANIFEST.MF

@@ -2,7 +2,7 @@ Manifest-Version: 1.0
 Bundle-ManifestVersion: 2
 Bundle-Name: Elasticsearch focused object store with revision capabilities
 Bundle-SymbolicName: com.b2international.index;singleton:=true
-Bundle-Version: 9.2.4.qualifier
+Bundle-Version: 9.3.1.qualifier
 Bundle-RequiredExecutionEnvironment: JavaSE-17
 Bundle-ActivationPolicy: lazy
 Require-Bundle: org.eclipse.core.runtime;bundle-version="3.9.0",

commons/com.b2international.index/pom.xml

@@ -4,7 +4,7 @@
 	<parent>
 		<groupId>com.b2international.snowowl</groupId>
 		<artifactId>commons-parent</artifactId>
-		<version>9.2.4-SNAPSHOT</version>
+		<version>9.3.1-SNAPSHOT</version>
 	</parent>
 	<artifactId>com.b2international.index</artifactId>
 	<packaging>eclipse-plugin</packaging>

commons/com.b2international.mapdb/pom.xml

@@ -4,7 +4,7 @@
 	<parent>
 		<groupId>com.b2international.snowowl</groupId>
 		<artifactId>commons-parent</artifactId>
-		<version>9.2.4-SNAPSHOT</version>
+		<version>9.3.1-SNAPSHOT</version>
 	</parent>
 	<artifactId>com.b2international.mapdb</artifactId>
 	<packaging>eclipse-plugin</packaging>

commons/pom.xml

@@ -9,7 +9,7 @@
 	<parent>
 		<groupId>com.b2international.snowowl</groupId>
 		<artifactId>snowowl-parent</artifactId>
-		<version>9.2.4-SNAPSHOT</version>
+		<version>9.3.1-SNAPSHOT</version>
 	</parent>
 
 	<modules>

core/com.b2international.snowowl.core.dependencies.feature/feature.xml

@@ -2,7 +2,7 @@
 <feature
       id="com.b2international.snowowl.core.dependencies.feature"
       label="Snow Owl Core Dependencies"
-      version="9.2.4.qualifier"
+      version="9.3.1.qualifier"
       provider-name="B2i Healthcare">
 
    <description url="https://b2ihealthcare.com">

core/com.b2international.snowowl.core.dependencies.feature/pom.xml

@@ -5,7 +5,7 @@
   <parent>
     <groupId>com.b2international.snowowl</groupId>
     <artifactId>core-parent</artifactId>
-    <version>9.2.4-SNAPSHOT</version>
+    <version>9.3.1-SNAPSHOT</version>
   </parent>
   <artifactId>com.b2international.snowowl.core.dependencies.feature</artifactId>
   <packaging>eclipse-feature</packaging>

core/com.b2international.snowowl.core.feature/feature.xml

@@ -2,7 +2,7 @@
 <feature
       id="com.b2international.snowowl.core.feature"
       label="Snow Owl Common Server Core"
-      version="9.2.4.qualifier"
+      version="9.3.1.qualifier"
       provider-name="B2i Healthcare">
 
    <description url="https://b2ihealthcare.com">

core/com.b2international.snowowl.core.feature/pom.xml

@@ -5,7 +5,7 @@
   <parent>
     <groupId>com.b2international.snowowl</groupId>
     <artifactId>core-parent</artifactId>
-    <version>9.2.4-SNAPSHOT</version>
+    <version>9.3.1-SNAPSHOT</version>
   </parent>
   <artifactId>com.b2international.snowowl.core.feature</artifactId>
   <packaging>eclipse-feature</packaging>

core/com.b2international.snowowl.core.rest.feature/feature.xml

@@ -2,7 +2,7 @@
 <feature
       id="com.b2international.snowowl.core.rest.feature"
       label="Snow Owl Administrative RESTful API Feature"
-      version="9.2.4.qualifier"
+      version="9.3.1.qualifier"
       provider-name="B2i Healthcare">
 
    <description url="https://b2ihealthcare.com">

core/com.b2international.snowowl.core.rest.feature/pom.xml

@@ -4,7 +4,7 @@
   <modelVersion>4.0.0</modelVersion>
   <parent>
     <artifactId>core-parent</artifactId>
-    <version>9.2.4-SNAPSHOT</version>
+    <version>9.3.1-SNAPSHOT</version>
     <groupId>com.b2international.snowowl</groupId>
   </parent>
   <artifactId>com.b2international.snowowl.core.rest.feature</artifactId>

core/com.b2international.snowowl.core.rest.tests/META-INF/MANIFEST.MF

@@ -2,7 +2,7 @@ Manifest-Version: 1.0
 Bundle-ManifestVersion: 2
 Bundle-Name: Snow Owl Administrative RESTful API Tests
 Bundle-SymbolicName: com.b2international.snowowl.core.rest.tests
-Bundle-Version: 9.2.4.qualifier
+Bundle-Version: 9.3.1.qualifier
 Bundle-Vendor: B2i Healthcare
 Bundle-RequiredExecutionEnvironment: JavaSE-17
 Require-Bundle: org.junit;bundle-version="4.12.0",

core/com.b2international.snowowl.core.rest.tests/pom.xml

@@ -9,7 +9,7 @@
 	<parent>
 		<groupId>com.b2international.snowowl</groupId>
 		<artifactId>core-parent</artifactId>
-		<version>9.2.4-SNAPSHOT</version>
+		<version>9.3.1-SNAPSHOT</version>
 	</parent>
 
 	<build>

core/com.b2international.snowowl.core.rest/META-INF/MANIFEST.MF

@@ -2,7 +2,7 @@ Manifest-Version: 1.0
 Bundle-ManifestVersion: 2
 Bundle-Name: Snow Owl REST API Module
 Bundle-SymbolicName: com.b2international.snowowl.core.rest;singleton:=true
-Bundle-Version: 9.2.4.qualifier
+Bundle-Version: 9.3.1.qualifier
 Bundle-Vendor: B2i Healthcare
 Automatic-Module-Name: com.b2international.snowowl.rest
 Bundle-RequiredExecutionEnvironment: JavaSE-17

core/com.b2international.snowowl.core.rest/pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<groupId>com.b2international.snowowl</groupId>
 		<artifactId>core-parent</artifactId>
-		<version>9.2.4-SNAPSHOT</version>
+		<version>9.3.1-SNAPSHOT</version>
 	</parent>
 
 	<artifactId>com.b2international.snowowl.core.rest</artifactId>