🧬 Omics Projects

A collection of bioinformatics projects completed during the Omics Nexus Summer School 2026.

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🔬 Modules Overview

Module 1 — Foundations Core bioinformatics tools: Python, R, Linux, and Bash scripting.

Module 2 — Transcriptomics & ML scRNA-seq pipeline for DEG identification and patient sample classification.

Module 3 — AI Protein Design End-to-end peptide binder design against the Nipah virus receptor-binding protein using ESMFold, fpocket, RFdiffusion, ProteinMPNN, and AlphaFold2 validation.

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👩‍💻 Author

Areesha Shahid | BS Bioinformatics, Quaid-i-Azam University

Omics Nexus Summer School 2026