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1. MatISSe MatISSe Public

   Deep learning auto-encoder for cell-type identification in biomicroscopy-based spatial transcriptomics

   Python

2. alTErego alTErego Public

   Compute TE-derived regulons from gene expression at the single-cell level

   Python 1

3. TLCpeaks TLCpeaks Public

   Peak Calling algorithm for RNA-binding protein

   Python 1

4. pyTEnrich pyTEnrich Public

   count and compute statistical enrichment of bed regions against transposable elements

   Python 2