Issues

• Update readme to install package using JuliaRegistries instead of git

  agate-model/Agate.jl#251 · Filter by author nanophyto opened on Sep 3, 2026

• heterogeneous numeric field types fail with forward diff

  agate-model/Agate.jl#231 · Filter by author nanophyto opened on Jun 10, 2026

• Add ad_check helper

  agate-model/Agate.jl#229 · Filter by author nanophyto opened on Jun 8, 2026

• Rename NiPiZD to NPiZiD

  agate-model/Agate.jl#219 · Filter by author nanophyto opened on May 15, 2026

• Add NiPiZD formulation to docstring

  agate-model/Agate.jl#218 · Filter by author nanophyto opened on May 15, 2026

• Replace Liebig min with smooth alternative

  agate-model/Agate.jl#215 · Filter by author nanophyto opened on May 11, 2026

• Allow tuples for diameters

  agate-model/Agate.jl#214 · Filter by author nanophyto opened on May 10, 2026

• Avoid repeated calculations

  agate-model/Agate.jl#213 · Filter by author nanophyto opened on Mar 17, 2026

• Improve OceanBioME.jl composability

  agate-model/Agate.jl#212 · Filter by author nanophyto opened on Mar 9, 2026

• Add parameter looping example

  agate-model/Agate.jl#211 · Filter by author nanophyto opened on Mar 9, 2026

• Make parameter vectors axis aware

  agate-model/Agate.jl#207 · Filter by author nanophyto opened on Feb 24, 2026
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• Add stand-alone example for quickstart

  agate-model/Agate.jl#203 · Filter by author nanophyto opened on Jan 16, 2026

• Make addition of plankton types more generic

  agate-model/Agate.jl#201 · Filter by author nanophyto opened on Jan 9, 2026
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• Generate generic photosynthetic growth function which can take arbitrary number of nutrients

  agate-model/Agate.jl#200 · Filter by author nanophyto opened on Jan 9, 2026

• Rename tracers in predator prey functions

  agate-model/Agate.jl#198 · Filter by author nanophyto opened on Oct 29, 2025
  

• Streamline manual predation matrix specification with NamedArrays

  agate-model/Agate.jl#191 · Filter by author nanophyto opened on Aug 6, 2025

• Many functions in Utils/Parameters missing from the documentation

  agate-model/Agate.jl#184 · Filter by author nanophyto opened on Apr 23, 2025

• Re-define allometric scaling function for 1 phytoplankton type model

  agate-model/Agate.jl#178 · Filter by author nanophyto opened on Apr 9, 2025

• Add concentration units

  agate-model/Agate.jl#152 · Filter by author FannyMonteiro opened on Feb 7, 2025
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• Predator prey example (matrix specification)

  agate-model/Agate.jl#151 · Filter by author nanophyto opened on Feb 7, 2025

• Trait-trade off example

  agate-model/Agate.jl#150 · Filter by author nanophyto opened on Feb 7, 2025

• Update Geider example

  agate-model/Agate.jl#149 · Filter by author nanophyto opened on Feb 7, 2025

• N_plankton example

  agate-model/Agate.jl#148 · Filter by author nanophyto opened on Feb 7, 2025

• Create summary configuration of model run

  agate-model/Agate.jl#147 · Filter by author nanophyto opened on Feb 7, 2025

• Add units to docstrings

  agate-model/Agate.jl#146 · Filter by author nanophyto opened on Feb 7, 2025