[Upgrade] LORIS Demo v25.0.0 to v26.0.0

.gitignore

@@ -0,0 +1,11 @@
+instruments/NDB_BVL_Instrument_aosi.class.inc
+instruments/NDB_BVL_Instrument_medical_history.class.inc
+instruments/NDB_BVL_Instrument_mri_parameter_form.class.inc
+instruments/NDB_BVL_Instrument_radiology_review.class.inc
+instruments/bmi.linst
+instruments/bmi.readme
+instruments/bmi.rules
+instruments/bmi.score
+instruments/bmi.meta
+tables_sql/crontab.sql
+tables_sql/drop_all_tables_statements.sql

config.xml

@@ -12,13 +12,9 @@
     <include>lorisDB.xml</include>
     <!-- set to 1 if development environment -->
     <dev>
-        <sandbox>1</sandbox>
+        <sandbox>0</sandbox>
     </dev>
 
-    <!-- MINC TOOLS PATH -->
-    <MINCToolsPath>/opt/minc/</MINCToolsPath>
-
-
     <!-- study variables -->
     <study>
         <PSCID>
@@ -29,7 +25,7 @@
                 <seq type="numeric" length="3" min='100' max='999'/> <!-- Ex: AAA1-->
             </structure>
         </PSCID>
-        
+
         <ExternalID>
             <generation>random</generation>
             <structure>
@@ -44,68 +40,7 @@
             <candidate>ProbandDoB</candidate>
             <parameter_session>MRI_Done</parameter_session>
         </HeaderTable>
-        <!-- defines how visit labels are assigned -->
-        <visitLabel subprojectID="1">
-            <!-- generation can have either 'user' or 'sequence' to denote user entered or a pre-defined sequence -->
-            <generation>sequence</generation>
-            <regex>/^[A-Z0-9]{2}$/i</regex>
-            <length>2</length>
-            <suggest>V%value%</suggest> <!-- %value% will be substituted for the next unique number -->
-            <labelSet>
-                <item value="V1">V1</item>
-                <item value="V2">V2</item>
-                <item value="V3">V3</item>
-            </labelSet>
-        </visitLabel>
-        <visitLabel subprojectID="2">
-            <!-- generation can have either 'user' or 'sequence' to denote user entered or a pre-defined sequence -->
-            <generation>sequence</generation>
-        <regex>/^[A-Z0-9]{2}$/i</regex>
-        <length>2</length>
-        <suggest>V%value%</suggest> <!-- %value% will be substituted for the next unique number -->
-        <labelSet>
-            <item value="V1">V1</item>
-            <item value="V2">V2</item>
-            <item value="V3">V3</item>
-        </labelSet>
-        </visitLabel>
-        <visitLabel subprojectID="3">
-            <!-- generation can have either 'user' or 'sequence' to denote user entered or a pre-defined sequence -->
-            <generation>sequence</generation>
-            <regex>/^[A-Z0-9]{2}$/i</regex>
-            <length>2</length>
-            <suggest>V%value%</suggest> <!-- %value% will be substituted for the next unique number -->
-            <labelSet>
-                <item value="V3">V3</item>
-                <item value="V4">V4</item>
-                <item value="V5">V5</item>
-                <item value="V6">V6</item>
-            </labelSet>
-        </visitLabel>
-        <visitLabel subprojectID="4">
-            <!-- generation can have either 'user' or 'sequence' to denote user entered or a pre-defined sequence -->
-            <generation>sequence</generation>
-            <regex>/^[A-Z0-9]{2}$/i</regex>
-            <length>2</length>
-            <suggest>V%value%</suggest> <!-- %value% will be substituted for the next unique number -->
-            <labelSet>
-                <item value="V3">V3</item>
-                <item value="V4">V4</item>
-                <item value="V5">V5</item>
-                <item value="V6">V6</item>
-            </labelSet>
-        </visitLabel>
-        <!-- Instruments for reliability module -->
-        <ReliabilityInstruments>
-            <Instrument>
-                <Testname>bmi</Testname>
-                <Threshold>0.5</Threshold>
-                <Displayname>BMI</Displayname>
-            </Instrument>
-
-        </ReliabilityInstruments>
-
-         <!-- certification module -->
+        <!-- certification module -->
         <Certification>
             <EnableCertification>1</EnableCertification>
             <CertificationProjects>
@@ -120,40 +55,6 @@
                 <test value="radiology_review">Radiology Review</test>
             </CertificationInstruments>
         </Certification>
-        <!--This permission allows users from sites to have access to other sites bvl feedback info -->
-        <multiSiteEnabledCenters>0</multiSiteEnabledCenters>
 
     </study>
-    <!-- end of study definition -->
-
-    <gui>
-        <showDatabaseQueries>0</showDatabaseQueries>
-    </gui>
-
-    <!-- used by _hasAccess in NDB_BVL_Instrument to determine
-         what permissions should be required for each instrument
-         on a configurable basis. -->
-    <instrumentPermissions>
-        <!-- By default anyone has permission -->
-        <useInstrumentPermissions>false</useInstrumentPermissions>
-        <!-- Add one instrument tag for each instrument that is
-             having it's permissions configured. If an instrument
-             is missing, the default is for users to have access
-             -->
-        <instrument>
-            <!-- Instrument name -->
-            <Test_name>sampleInstrument</Test_name>
-            <!-- Permission required for accessing instrument.
-                 If multiple permissions are added, *any* of
-                 them individually will allow access to the
-                 instrument -->
-            <permission>sampleInstrumentPermissionName</permission>
-        </instrument>
-        <instrument>
-            <Test_name>sampleInstrument2</Test_name>
-            <permission>sampleInstrument2PermissionName</permission>
-        </instrument>
-    </instrumentPermissions>
-
 </config>
-