ambivirus_extended_data

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Artem Babaian edited this page Aug 22, 2022 · 4 revisions

Extended Data for `Extant hybrids of RNA viruses and viroid-like elements`

Preprint: Extant hybrids of RNA viruses and viroid-like elements. (Forgia, Navarro et al., 2022)

Ambiviruses sequences

ambi_rdrp_id90.fa: 422 Ambivirus RdRp sequences; centroids from 90% amino acid identity clustering
ambi_genome_id90.fa: 612 Ambivirus putative complete genome sequences, centroids from 90% nucleotide identity clustering

Ambivirus RdRp phylogeny

ambi_palm_msa.fa: Multiple sequence alignment of ambi-palmprints for constructing phylogeny
ambi_tree.newick: Tree file for ambivirus phylogeny

`INFERNAL` Ribozyme Co-variation Models

dvr5.cm Ribozyme CM models for "deltavirus", "hairpin", several "hammerhead", "twister" and "Varkud Satellite" motifs. Used to search the ~200K metagenome/metatranscriptome libraries in the SRA.

circular RNA bearing paired-ribozymes

viroid-like_circles.tar.gz: Tar file containing ~32K circular RNA (viroid-like elements) sequences and metadata identified in the RDVA dataset.

RNA Deep Virome Assemblage

License

All data is cc0 following INSDC/Serratus Data policies