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@Ultimagen

Ultima Genomics

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  1. healthomics-workflows healthomics-workflows Public

    UltimaGenomics repository for workflows compatible with AWS HealthOmics

    WDL 13 4

  2. VariantCalling VariantCalling Public

    Ultima scripts related to downstream processing of WGS, MRD, methylation analysis

    Jupyter Notebook 9

  3. FREEC FREEC Public

    Forked from BoevaLab/FREEC

    Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data

    C++ 1 1

  4. ugbio-utils ugbio-utils Public

    Ultima Genomics bioinfo-utils

    Python 1

  5. test-lfs test-lfs Public

    test git lfs issues

  6. picard picard Public

    Forked from broadinstitute/picard

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Java

Repositories

Showing 10 of 22 repositories
  • gridss Public Forked from PapenfussLab/gridss

    GRIDSS: the Genomic Rearrangement IDentification Software Suite

    Ultimagen/gridss’s past year of commit activity
    Java 0 74 0 0 Updated Apr 17, 2025
  • ugbio-utils Public

    Ultima Genomics bioinfo-utils

    Ultimagen/ugbio-utils’s past year of commit activity
    Python 1 0 0 5 Updated Apr 17, 2025
  • picard Public Forked from broadinstitute/picard

    A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

    Ultimagen/picard’s past year of commit activity
    Java 0 MIT 375 0 0 Updated Apr 15, 2025
  • VariantCalling Public

    Ultima scripts related to downstream processing of WGS, MRD, methylation analysis

    Ultimagen/VariantCalling’s past year of commit activity
    Jupyter Notebook 9 Apache-2.0 0 5 4 Updated Apr 12, 2025
  • gatk Public Forked from broadinstitute/gatk

    Official code repository for GATK versions 4 and up

    Ultimagen/gatk’s past year of commit activity
    Java 0 609 0 3 Updated Apr 3, 2025
  • healthomics-workflows Public

    UltimaGenomics repository for workflows compatible with AWS HealthOmics

    Ultimagen/healthomics-workflows’s past year of commit activity
    WDL 13 4 2 1 Updated Apr 2, 2025
  • jalign Public

    Alignment for SV/CNV calls

    Ultimagen/jalign’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Mar 31, 2025
  • parascopy Public Forked from tprodanov/parascopy

    Copy number estimation and variant calling for duplicated genes using WGS.

    Ultimagen/parascopy’s past year of commit activity
    Python 0 MIT 4 0 0 Updated Jan 30, 2025
  • wgbs_tools Public Forked from nloyfer/wgbs_tools

    tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies

    Ultimagen/wgbs_tools’s past year of commit activity
    Python 0 44 0 0 Updated Dec 24, 2024
  • HLA-LA Public Forked from DiltheyLab/HLA-LA

    Fast HLA type inference from whole-genome data

    Ultimagen/HLA-LA’s past year of commit activity
    C++ 0 GPL-3.0 42 0 0 Updated Nov 3, 2024
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