Make idx files independent as before (no requirements of keeping fasta around)#100

Merged

jke000 merged 18 commits intomasterfrom

Jan 7, 2026

Commits on Dec 22, 2025

Add protein description string to FI .idx file so that the original FASTA is no longer needed to run FI searches. The flanking amino acid residues, which were previously parsed on-the-fly from the …
jke000
committed

Commits on Dec 23, 2025

Per request, the .idx files (for both peptide indexing and fragment ion indexing) now store protein description text in them, making them self-sufficient for searching. The original FASTA is no lon…
jke000
committed

Commits on Dec 30, 2025

Commits on Jan 6, 2026