FIJI plugin for interactive 3D exploration of multiple large (and small) volumetric datasets and geometric shapes, built on BigVolumeViewer (fork).
It can display volumetric (microscopy) data, SMLM datasets, and geometric objects (point clouds and meshes) in various rendering modes.
Objects can be clipped and transformed freely in 3D, and it works with timelapse data.
BVB performs lazy loading and supports a multi-scale pyramidal data formats.
This speeds up render and allows exploration of datasets larger than GPU memory.
It supports rendering of 3D visualization movies using key frame animation interface.
Users: please check full description/tutorials in the project's wiki.
There is a video tutorial (big thanks to @jomaydc).
For questions, tag me (@ekatrukha) at image.sc forum.
Developers: check some code examples.
Feel free to reach out, since the code description/comments are not always in the best shape.
Questions with answers:
What's next here? See the development roadmap.
Want to contribute? Submit a PR. Or create an issue.
Wanna see live progress on development? Check this feed.
Not happy with it? Something is fundamentally wrong?
Consider alternative open-source tools for 3D viewing.
Like it? Spread the word and give it a star on GitHub.
Acknowledgements
Powered (and made possible) by a hard work of very talented people behind:
- ImageJ
- FIJI
- imglib2
- BioFormats
- JglTF
- BigDataViewer (BDV)
- BDV-loaders
- BigVolumeViewer (playground edition).
this application relies on components licensed under the LGPL-2.1
- laszip4j v.0.20
Developed in Cell Biology group of Utrecht University.
E-mail for any questions or tag @ekatrukha at image.sc forum.
Logo design Anna Vinokurova