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Fetch upstream #3

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Fetch upstream #3

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Description

Review Time Estimate

  • Immediately
  • Within one week
  • When possible

Types of changes

  • Bug fix (non-breaking change which fixes an issue)
  • New feature (non-breaking change which adds functionality)
  • Breaking change (fix or feature that would cause existing functionality to change)

Checklist:

  • My change requires a change to the documentation.
  • I have updated the CHANGELOG.md.
  • I have signed the CLA
  • I have updated the documentation accordingly.
  • I have read the CONTRIBUTING document.
  • I have added tests to cover my changes.
  • All new and existing tests passed.

ddey2 and others added 30 commits April 7, 2022 15:42
Added logic for primary Clowder instance which handles multiple extra…
* use docker build action

also cross platform building and cache

* don't build arm for elasticsearch

* mongo-init amd64 only

* update version calc

* missing quotes

* newline

* update docker

- use newer java version (fixes #361)
- build arm version (fixes #322)

* fix error in action

* fix tags

* update tags pushed

* special case for clowder image

* add names to steps

* push

* push image

- needed for cache

* only push to dockerhub

* use github.actor

* disable fail-fast

* explicit set permissions

* push to branch tag for cache

* remove cache

* version bump

* Updated CHANGELOG.md.

Co-authored-by: Luigi Marini <[email protected]>
* Fix to send notifications to all the admins in one email

Issue: 330

Signed-off-by: Dipannita Dey <[email protected]>

* Fixed recipients info on email while submit/accept/reject access to a space

Signed-off-by: Dipannita Dey <[email protected]>

Co-authored-by: Luigi Marini <[email protected]>
* New IFC previewer

* Added an IFC previewer and a GLTF previewer

* Changelog update

Co-authored-by: Chrysovalantis Constantinou <[email protected]>
Co-authored-by: Luigi Marini <[email protected]>
* Adds MRI previewer for NIFTY (.nii) file format.

* deleted vim swap files

* Added application/x-gzip to file types on which nii previewer runs on.

* Added changelog and contributors.

Co-authored-by: Luigi Marini <[email protected]>
Co-authored-by: Luigi Marini <[email protected]>
original migration forgot to count files in folders
* Fix to remove a dataset from a space #349

Signed-off-by: Dipannita Dey <[email protected]>
robkooper and others added 30 commits September 9, 2022 22:24
I believe there was a formatting issue in this yaml code on lines 216 and 239
…eate-dataset-creates-2-datasets

311 double click on create dataset creates 2 datasets
* updateing lastModifiesdate of dataset
* Adding lastModifiedDate to UI

Co-authored-by: toddn <[email protected]>
* add private registration endpoint
* add user filter
* unique key + perms
* make extractor key an option
* list user extractors if no process type specified
* Permission check updates
* Added a dropdown menu for specific space types
* follow cilogon example

* add keycloak

* keycloak is working now

* changelog

* revert accidental change

* replace the default conf to clowder

* typo

* use the correct group

* check roles also

* provide examples of filtering by grouops and roles

---------

Co-authored-by: Luigi Marini <[email protected]>
* add citation.cff

* remove extra title

* fix citation

* add grants

* fix version number

* remove leftover "

* Updated Todd's affiliation in citation.

---------

Co-authored-by: Luigi Marini <[email protected]>
* add missing SMTP_FROM in docker-comopse yml file

* add smtp.from in custom.conf

* add default smtp.from in custom.conf

---------

Co-authored-by: Luigi Marini <[email protected]>
Bumps [certifi](https://github.com/certifi/python-certifi) from 2021.5.30 to 2022.12.7.
- [Release notes](https://github.com/certifi/python-certifi/releases)
- [Commits](certifi/python-certifi@2021.05.30...2022.12.07)

---
updated-dependencies:
- dependency-name: certifi
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Luigi Marini <[email protected]>
* Fix previewers source code folder URL.

* Update CHANGELOG.md

* Update CHANGELOG.md

---------

Co-authored-by: Luigi Marini <[email protected]>
* add readonly mode

tested with create spaces/datasets/files but might be missing special cases.
fixes #405

* more readonly checks

* send email with correct status

* allow to download (based on permission)

* fix user status email

* typo

* fix page for user change

* use latest checkout action

* bump java action to v3

* update cache

---------

Co-authored-by: Luigi Marini <[email protected]>
* modifications to indexing

* remove old comment

* Update CHANGELOG.md

---------

Co-authored-by: Luigi Marini <[email protected]>
Bumps [requests](https://github.com/psf/requests) from 2.21.0 to 2.31.0.
- [Release notes](https://github.com/psf/requests/releases)
- [Changelog](https://github.com/psf/requests/blob/main/HISTORY.md)
- [Commits](psf/requests@v2.21.0...v2.31.0)

---
updated-dependencies:
- dependency-name: requests
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Luigi Marini <[email protected]>
Bumps [requests](https://github.com/psf/requests) from 2.21.0 to 2.31.0.
- [Release notes](https://github.com/psf/requests/releases)
- [Changelog](https://github.com/psf/requests/blob/main/HISTORY.md)
- [Commits](psf/requests@v2.21.0...v2.31.0)

---
updated-dependencies:
- dependency-name: requests
  dependency-type: direct:production
...

Signed-off-by: dependabot[bot] <[email protected]>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Luigi Marini <[email protected]>
* setting viewer as default

* adding to change log

---------

Co-authored-by: Rob Kooper <[email protected]>
Co-authored-by: Luigi Marini <[email protected]>
* Add trash checks for Datasets, Collections

* Update CHANGELOG.md

* Remove entries from Elasticsearch

* check if files are in trash

---------

Co-authored-by: Luigi Marini <[email protected]>
* New IFC previewer

* Added an IFC previewer and a GLTF previewer

* Changelog update

* Fix positioning issues of three.js previewer

* Added changes to CHANGELOG.md

* Improving the 3D model viewer

* Remove the console.log

---------

Co-authored-by: Chrysovalantis Constantinou <[email protected]>
Co-authored-by: Luigi Marini <[email protected]>
Co-authored-by: Luigi Marini <[email protected]>
* Add some missing sections endpoints

* rename getSections endpoint to sections

* Fix name clash in 61f451d

---------

Co-authored-by: Luigi Marini <[email protected]>
* Fixed hearthbeat bug where if the owner was not set in extractors_info.json clowder would
throw and error and the extractor would not get registered.

* Updated version to 1.22.1

* Fixed citation.
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