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Error in get_dbs_context(): There should not be any variants with multiple alternative alleles.

Status: Open.

#89 In UMCUGenetics/MutationalPatterns;

· anabbi opened on Jan 8, 2025

Update Frequency of the MutationalPatterns Database

Status: Open.

#88 In UMCUGenetics/MutationalPatterns;

· mullerbsf opened on Nov 7, 2024

problem with get_mut_type(data, type = "dbs", predefined_dbs_mbs = FALSE)

Status: Open.

#87 In UMCUGenetics/MutationalPatterns;

· riccardobergamin opened on Jan 24, 2024

count_dbs_contexts() error

Status: Open.

#86 In UMCUGenetics/MutationalPatterns;

· ThomasGro opened on Dec 4, 2023

Expected number of INDELs using genomic_distribution

Status: Open.

#85 In UMCUGenetics/MutationalPatterns;

· cutleraging opened on Nov 29, 2023

easyrun error:

Status: Open.

#83 In UMCUGenetics/MutationalPatterns;

· asmo2a opened on Apr 11, 2023

GenomeInfoDb::seqlevelsStyle(gr) <- GenomeInfoDb::seqlevelsStyle(genome)

Status: Open.

#82 In UMCUGenetics/MutationalPatterns;

· annecarolm opened on Feb 24, 2023

Mutation matrix as input instead of vcf files

Status: Open.

#80 In UMCUGenetics/MutationalPatterns;

· tc86 opened on Nov 16, 2022

Error with "read_vcfs_as_granges" function

Status: Open.

#79 In UMCUGenetics/MutationalPatterns;

· shaghayeghsoudi opened on Oct 26, 2022

How to obtain the SNVs belong to a typical mutational signature

Status: Open.

#77 In UMCUGenetics/MutationalPatterns;

· Liyang-Zhang opened on Aug 23, 2022

How to use MuationalPatterns (or if I can) with Copy number signatures

Status: Open.

#76 In UMCUGenetics/MutationalPatterns;

· ipstone opened on Jul 13, 2022

Use extracted signature along with SBS

Status: Open.

#75 In UMCUGenetics/MutationalPatterns;

· mcdoz2010 opened on Jul 11, 2022