Dynamics of single-cell protein covariation during epithelial–mesenchymal transition #18
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…on added. Assays linked (PSM-Peptide, Peptide-Protein)
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@lgatto I finalized the work on the new dataset and it is ready for review. |
lgatto
requested review from
lgatto and
samgregoire
and removed request for
lgatto
samgregoire
approved these changes
Feb 29, 2024
inst/extdata/metadata.csv
Outdated
| @@ -21,3 +21,4 @@ | |||
| "20","woo2022_macrophage","Single-cell proteomics data from LPS-treated macrophages.","3.18",NA,"TXT","ftp://massive.ucsd.edu/MSV000085937/",NA,"Homo sapiens",9606,TRUE,"MassIVE","Christophe Vanderaa <[email protected]>","QFeatures","Rda","scpdata/woo2022_macrophage.Rda",2022-05-18,5,"MaxQuant","LFQ",FALSE,TRUE,TRUE,TRUE,NA | |||
| "21","woo2022_lung","Single-cell proteomics data from primary human lung cells.","3.18",NA,"TXT","ftp://massive.ucsd.edu/MSV000085937/",NA,"Homo sapiens",9606,TRUE,"MassIVE","Christophe Vanderaa <[email protected]>","QFeatures","Rda","scpdata/woo2022_lung.Rda",2022-05-18,5,"MaxQuant","LFQ",FALSE,TRUE,TRUE,TRUE,NA | |||
| "22","gregoire2023_mixCTRL","Single-cell proteomics data from two monocyte cell lines","3.19",NA,"TXT","https://www.ebi.ac.uk/pride/archive/projects/PXD046211",NA,"Homo sapiens",9606,TRUE,"PRIDE","Samuel Gregoire <[email protected]>","QFeatures","Rda","scpdata/gregoire2023_mixCTRL.Rda",2024-01-22,119,"Sage","TMT-16",TRUE,TRUE,TRUE,TRUE,NA | |||
| "23","khan2023","Single-cell proteomics data of 421 MCF-10A cells undergoingEMT triggered by TGFβ","3.19",NA,"TXT","ftp://[email protected]/",NA,"Homo sapiens",9606,TRUE,"MassIVE","Enes Sefa Ayar <[email protected]>","QFeatures","Rda","scpdata/khan2023.Rda",2023-12-21,47,"MaxQuant","TMTPro 16plex",TRUE,TRUE,TRUE,TRUE,NA | |||
There was a problem hiding this comment.
Missing space between "undergoing" and "EMT". See make-metadata.R
Co-authored-by: samgregoire <[email protected]>
Co-authored-by: samgregoire <[email protected]>
Co-authored-by: samgregoire <[email protected]>
lgatto
requested changes
Mar 7, 2024
|
You can provide Lori with this link to the update metadata file: https://github.com/UCLouvain-CBIO/scpdata/blob/master/inst/extdata/metadata.csv |
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QFeatures object available at https://zenodo.org/records/10696447