v2.0.1

What's Changed

• DOC: Update parameter use, file structure, versioning and metadata by @fredjaya in #50

Full Changelog: v2.0.0...v2.0.1

v2.0.0

What's Changed

• Update README.md by @georgiesamaha in #32
• FIX: convert bwa index check to channel by @georgiesamaha in #36
• BUG: Fix bwa_index_ch logic by @fredjaya in #40
• ENH: Check samplesheet with native groovy and bash process by @fredjaya in #42
• Config updates and add schema by @fredjaya in #43
• MAINT: Run PB 4.6.0 on dgxa100 by @fredjaya in #47

Full Changelog: v1.1.0...v2.0.0

v1.1.0

What's Changed

• Fix typo re: feature request by @georgiesamaha in #28
• Change glnexus container by @calizilla in #29

Full Changelog: v1.0.0...v1.1.0

v1.0.0

What's Changed

• First update: basic workflow structure, check inputs, and optional fasta indexing by @georgiesamaha in #1
• Add fq2bam module by @georgiesamaha in #7
• Add deepvariant module by @georgiesamaha in #9
• Add glnexus joint genotype and bcf > vcf conversion modules by @georgiesamaha in #12
• Add GATK CollectBamMetrics module by @georgiesamaha in #14
• Add variant annotation with VEP by @georgiesamaha in #16
• Add some QC reporting by @georgiesamaha in #19
• added account, lstorage and SingCache flexibility by @calizilla in #18
• Configure for Gadi by @georgiesamaha in #20
• Create CITATION.cff by @georgiesamaha in #23
• Add test data for execution testing by @georgiesamaha in #25
• Add workflow diagram by @georgiesamaha in #26
• Add acknowledgements and citation by @georgiesamaha in #27

Full Changelog: https://github.com/Sydney-Informatics-Hub/Parabricks-Genomics-nf/commits/v1.0.0