Check for changes in NP json files #3
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| name: Check for changes in NP json files | |
| on: | |
| schedule: | |
| - cron: '0 0 * * 2' # Every Tuesday at 00:00 UTC | |
| workflow_dispatch: | |
| # Grant permissions for the job to write to contents (push) and create PRs. | |
| permissions: | |
| contents: write | |
| pull-requests: write | |
| jobs: | |
| build-and-pr: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out local repository | |
| uses: actions/checkout@v4 | |
| # Set up a Python environment | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.10' | |
| # Clone dev version of probeinterface | |
| - name: Clone external repository | |
| run: | | |
| git clone https://github.com/spikeinterface/probeinterface ./probeinterface | |
| - name: Install probeinterface and matplotlib | |
| run: pip install ./probeinterface matplotlib | |
| - name: Generate full NP library | |
| run: | | |
| cd scripts/ | |
| python ../probeinterface/resources/generate_neuropixels_library.py | |
| # Check for any new probes | |
| - name: Run local script | |
| run: | | |
| rsync -av --include='*/' --include='*.json' --exclude='*' scripts/neuropixels_library_generated/ imec/ | |
| rm -r scripts/neuropixels_library_generated/ | |
| rm -r ./probeinterface | |
| - name: Commit changes if any | |
| id: commit | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Action" | |
| git add imec/* | |
| # Only commit if there are changes | |
| if git diff --staged --quiet; then | |
| echo "No changes to commit" | |
| echo "changes=false" >> $GITHUB_OUTPUT | |
| else | |
| git commit -m "Update json files for NP probes" | |
| echo "changes=true" >> $GITHUB_OUTPUT | |
| fi | |
| - name: Create pull request to add probes | |
| if: steps.commit.outputs.changes == 'true' | |
| uses: peter-evans/create-pull-request@v7 | |
| with: | |
| title: "Update Neuropixels json files" | |
| body: "This PR updates the Neuropixel probes in probeinterace library, based on new data from the ProbeTable repository or because of a new ProbeInterface release." | |
| branch-suffix: short-commit-hash | |
| base: "main" |