Add comprehensive MCP server instructions and reorganize guides

[oscarvalenzuelab]

Summary

This PR enhances the MCP server with comprehensive instructions for better integration and reorganizes documentation into a structured guides directory.

Changes

MCP Server Instructions Enhancement

• Workflow Patterns: Documents the license-first approach and optimal tool execution order
• Tool Selection Guidance: Provides clear guidance on when to use each tool for different compliance scenarios
• Performance Constraints: Documents timeouts, depth limits, and package limits to avoid performance issues
• Input Format Requirements: Includes examples for PURLs, CPEs, and SPDX identifiers
• Common Workflows: Provides 5 ready-to-use workflow patterns for typical scenarios
• Resource Access: Documents available resources (license database, policy templates)
• Error Handling: Explains how tools signal failures and when to expect specific errors

Documentation Reorganization

• Created new guides/ directory for specialized documentation
• Moved MOBILE_APP_COMPLIANCE_GUIDE.md to guides/ folder
• Updated all references in SUPPORT.md, CONTRIBUTING.md, and MANIFEST.in
• Updated MANIFEST.in to recursively include all markdown files in guides directory

Documentation Updates

• Added "Server Instructions" section to README.md explaining the new capabilities
• Updated CHANGELOG.md with all new features and improvements

Benefits

• Better context injection for MCP protocol integration
• Clearer guidance on optimal tool usage patterns
• Improved performance through documented constraints
• More organized documentation structure
• Easier to add future specialized guides

Testing

• Verified all documentation links are functional
• Confirmed no references to proprietary technologies in commit history
• Validated MANIFEST.in includes guides directory properly

Related Documentation

• Model Context Protocol: https://modelcontextprotocol.io/
• Server Instructions Best Practices: https://blog.modelcontextprotocol.io/posts/2025-11-03-using-server-instructions/