updated container

updated container with pip install macsima2mc

v1.2.6

Update README.md

v1.2.5

Update pyproject.toml

v1.2.3

Update pyproject.toml

Updated environment.yml

Remove installation of Basicpy from Dockerfile
Added installation of Basicpy on environment.yml

v1.2.4

v.1.2.4

Bump up version

Added argument to skip staging and only calculate image qc metrics

1.2.2

added option in CLI to only calculate qc and skip staging

correction of minor details in CLI help

v1.2.1

Update CLI.py

Added qc metrics functionality

*Added qc.py
*Rename subdirectory argument in CLI (currently is -osd = --output_subdir)
*Added the option to save all cycle info and qc as a csv table.
*Multiprocessing is used in qc.py to accelerate calculation on images.
*Added functionality to the CLI flag -rr = --remove_reference_marker

Corrected error in catching markers pattern

Update mc_tools.py

modify the markers pattern to catch cases in which the marker has an hyphen in the name