update site

STAPM · Jun 6, 2023 · cc22f79 · cc22f79
1 parent 573a8da
commit cc22f79
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Showing 47 changed files with 231 additions and 63 deletions.
diff --git a/01_install_packages.R b/01_install_packages.R
@@ -13,6 +13,8 @@ if(!dir.exists(project_lib)) {dir.create(project_lib)}
 
 .libPaths(project_lib)
 
+update.packages(ask = FALSE, checkBuilt = TRUE, lib.loc = project_lib)
+
 ###########################
 # CRAN packages
 
@@ -72,7 +74,9 @@ packages <- c(
   "utils",
   "VGAM",
   "viridis",
-  "writexl")
+  "writexl",
+  "pkgdown",
+  "DLL")
 
 
 # Install packages not yet installed

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/LICENSE.html b/docs/LICENSE.html
diff --git a/docs/articles/Alcohol-attributable_diseases_and_dose-response_curves.pdf b/docs/articles/Alcohol-attributable_diseases_and_dose-response_curves.pdf
diff --git a/docs/articles/Methods_for_STAPM_disease_risks.html b/docs/articles/Methods_for_STAPM_disease_risks.html
diff --git a/docs/articles/PAF_methodology_report.html b/docs/articles/PAF_methodology_report.html
diff --git a/docs/articles/PAF_methodology_report_files/navigation-1.1/codefolding.js b/docs/articles/PAF_methodology_report_files/navigation-1.1/codefolding.js
@@ -31,7 +31,7 @@ window.initializeCodeFolding = function(show) {
     $(this).detach().appendTo(div);
 
     // add a show code button right above
-    var showCodeText = $('<span>' + (showThis ? 'Hide' : 'Code') + '</span>');
+    var showCodeText = $('<span>' + (showThis ? 'Hide' : 'Show') + '</span>');
     var showCodeButton = $('<button type="button" class="btn btn-default btn-xs btn-secondary btn-sm code-folding-btn pull-right float-right"></button>');
     showCodeButton.append(showCodeText);
     showCodeButton
@@ -57,7 +57,7 @@ window.initializeCodeFolding = function(show) {
     //   * Change text
     //   * add a class for intermediate states styling
     div.on('hide.bs.collapse', function () {
-      showCodeText.text('Code');
+      showCodeText.text('Show');
       showCodeButton.addClass('btn-collapsing');
     });
     div.on('hidden.bs.collapse', function () {

diff --git a/docs/articles/Smoking_and_the_risks_of_adult_diseases.pdf b/docs/articles/Smoking_and_the_risks_of_adult_diseases.pdf
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/articles/tobalcepi.html b/docs/articles/tobalcepi.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -1,4 +1,4 @@
-pandoc: '2.18'
+pandoc: 2.19.2
 pkgdown: 2.0.7
 pkgdown_sha: ~
 articles:
@@ -7,7 +7,7 @@ articles:
   PAF_methodology_report: PAF_methodology_report.html
   Smoking_and_the_risks_of_adult_diseases: Smoking_and_the_risks_of_adult_diseases.pdf
   tobalcepi: tobalcepi.html
-last_built: 2023-03-22T09:56Z
+last_built: 2023-06-06T10:27Z
 urls:
   reference: https://stapm.github.io/tobalcepi/reference
   article: https://stapm.github.io/tobalcepi/articles

diff --git a/docs/reference/AlcBinge.html b/docs/reference/AlcBinge.html
diff --git a/docs/reference/AlcBinge_stapm.html b/docs/reference/AlcBinge_stapm.html
diff --git a/docs/reference/AlcLags.html b/docs/reference/AlcLags.html