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feat: json schema #358

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@tristan-f-r tristan-f-r commented Jul 28, 2025 •
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Adds the JSON config schema using the initial properties from #292. This is split off from #329 and allows for intelligent IDE validation

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schema.json is generated by update_schema.py.

tristan-f-r and others added 30 commits July 14, 2025 11:07
@tristan-f-r
Merge branch 'property-expe' into config-args
7d521ce
@tristan-f-r
Merge branch 'config-pydantic' into config-args
9c85c56
@tristan-f-r
feat: rough draft of args design
647f947
@tristan-f-r
feat: type oi1/oi2, rwr/strwr
76011e0
@tristan-f-r
refactor: meo, mcf, pl types
94b50c8
@tristan-f-r
chore: begin slowly updating
09fa1ba
@tristan-f-r
refactor: moving more tests
32d4b5c
@tristan-f-r
fix: correct params
9b539e9
@tristan-f-r
fix: specify default args out of run
da67711
@tristan-f-r
fix: more defaults
45cfe87
@tristan-f-r
Merge branch 'umain' into config-args
a6406e2
@tristan-f-r
Merge branch 'no-globals' into config-args
cf93cec
@tristan-f-r
feat: begin algorithm parsing
e080857
@tristan-f-r
fix: clean up type errors, begin nondetermnism
53f55e2
@tristan-f-r
Merge branch 'config-pydantic' into config-args
7c2454b
@tristan-f-r
chore: begin little utility
a4e265d
@tristan-f-r
chore: mv container schema changes over
145b2ec
@tristan-f-r
feat: initial schema
5effe69
@tristan-f-r
feat: more algs schema handling
398350e
@tristan-f-r
feat: default runs for default algorithms
72c4cbd
@tristan-f-r
feat: function running
2ef2672
@tristan-f-r
chore: drop play
9442b64
@tristan-f-r
fix(config): don't try to parse in config.py
60b562f
@tristan-f-r
fix: subscriptability
c1947e6
@tristan-f-r
fix: auto-discriminator mapping & forbid
8beaf72
@tristan-f-r
style: fmt
b07a7ef
@tristan-f-r
fix: coerce fields to validate default
0bcd1d1
@tristan-f-r
fix: test
1cb5d17
@tristan-f-r
fix: correct all algorithm usage
c93244f
@tristan-f-r
chore: talk about resumability
69268f4
tristan-f-r and others added 30 commits September 6, 2025 05:51
@tristan-f-r
chore: drop schema
b617825 
see Reed-CompBio#358
@tristan-f-r
Merge branch 'main' into config-args
9992013
@tristan-f-r
test: fix
a77263f
@tristan-f-r @ntalluri
Update spras/config/algorithms.py
05e40c4 
Co-authored-by: Neha Talluri <[email protected]>
@tristan-f-r
Merge branch 'container-schema-use' into config-args
5892445
@tristan-f-r
test(btb): correct tests
cea83b2
@tristan-f-r
style: fmt
d9f251d
@tristan-f-r
test: correct other mishaps
dbe6971
@tristan-f-r
fix(mcf): correct types
647907a
@tristan-f-r
fix(oi1): correct dummy node handling
25a0796
@tristan-f-r
test: correct misc artifacts
554e7ae
@tristan-f-r
fix: allow yaml safe dump of case insensitive enums
105b72d
@tristan-f-r
docs: give credit to prev. commit
eaecd33
@tristan-f-r
fix: correctly write enum
6933fe4
@tristan-f-r
test(domino): don't unlink file before reading
8fa7ca5 
bad copy & paste
@tristan-f-r
fix: correct other alg parameters, summary test update
f321f79
@tristan-f-r
fix(summary): drop _spras_run_name
ef02ac5
@tristan-f-r
Merge branch 'container-schema-use' into config-args
fb3fa0e
@tristan-f-r
Merge branch 'umain' into config-args
313fac2
@tristan-f-r
Merge remote-tracking branch 'upstream/main' into config-args
a50c181
@tristan-f-r
docs: update contributing
c3be550
@tristan-f-r
chore: drop directed info
830b07c
@tristan-f-r
Merge branch 'config-args' of https://github.com/tristan-f-r/spras in…
b2d4239 
…to config-args
@tristan-f-r @ntalluri
docs: typo?
3b84e8f 
Co-authored-by: Neha Talluri <[email protected]>
@tristan-f-r
chore: apply suggestions, fix meo param
33a85d8
@tristan-f-r
docs: move domino cmt
81a16fe
@tristan-f-r
docs: more suggestions
25e8b67
@tristan-f-r
docs: more cmts
dce8e42
@tristan-f-r
Merge branch 'config-args' into schemaa
df25d11
@tristan-f-r
chore: update schema
2bbdb80
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