Update summary.py to include parameter combinations #194
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ntalluri
reviewed
Nov 18, 2024
spras/analysis/summary.py
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| # algorithm parameters have format { algo : { hashcode : { parameter combos } } } | ||
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| filepath = nw_name.split("/") | ||
| filename = filepath[1].split("-") |
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Will this work for outputs stored in subfolders within the main output folder?
example output/example/data#-algo-params-hashcode/pathway.txt"
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Can get the list of algorithm-params-hashcode from algorithms_with_params in the Snakefile and then pass it to the function so you don't have to extract it
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For the test cases, we discussed dropping the toy summarization example because it does not have corresponding algorithm-parameter combinations that generated those graphs. We will summarize only the example data and EGFR data that correspond to actual SPRAS runs. |
warning: in the working copy of 'test/analysis/input/example/data0-allpairs-params-BEH6YB2_pathway.txt', LF will be replaced by CRLF the next time Git touches it
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