Issues

• [New Tool Request]: OntoGPT

  new tool request
  RECETOX/galaxytools#823 · Filter by author hechth opened on Oct 13, 2026
  

• [New Tool Request]: MS Metabolomics Database Data Manager

  new tool request
  RECETOX/galaxytools#821 · Filter by author hechth opened on Oct 13, 2026

• [New Tool Request]: OPERA

  generation-failednew tool requestplan-readypr-openedready-to-implement
  RECETOX/galaxytools#818 · Filter by author Ondrej-Bucek opened on Oct 2, 2026
  10

• Freqsap tool produces different results in each run

  RECETOX/galaxytools#816 · Filter by author mbodova opened on Oct 2, 2026

• aoptk match outputs

  RECETOX/galaxytools#785 · Filter by author rdurnik opened on Jul 10, 2026

• Split recetox-xmsannotator tool

  RECETOX/galaxytools#781 · Filter by author hechth opened on Jun 30, 2026
  

• Add XLSX handling support to the stratified randomization tool

  RECETOX/galaxytools#775 · Filter by author hechth opened on Jun 19, 2026

• [bioconductor msnbase smooth chromatogram]: tool renames run id in .mzml files

  bug
  Bug

  RECETOX/galaxytools#760 · Filter by author Ondrej-Bucek opened on Jun 12, 2026
  

• [New Tool Request]: RDKit Chem calculate structural similarity

  new tool request
  RECETOX/galaxytools#746 · Filter by author hechth opened on Apr 17, 2026
  

• recetox-boxplot: Tool not present on any galaxy instance

  RECETOX/galaxytools#744 · Filter by author mbodova opened on Mar 31, 2026
  1

• Update workflows with new Galaxy version

  RECETOX/galaxytools#725 · Filter by author hechth opened on Jan 20, 2026
  

• Possible extension of enviPat

  RECETOX/galaxytools#672 · Filter by author acquayefrank opened on May 29, 2025

• matchms: adde create consensus spectra tool

  new tool request
  RECETOX/galaxytools#670 · Filter by author hechth opened on May 23, 2025

• isolib: Add SDF to supported input files (future)

  RECETOX/galaxytools#667 · Filter by author hechth opened on May 20, 2025

• RIAssigner: add tabular to supported input formats

  enhancementgood first issue
  RECETOX/galaxytools#665 · Filter by author hechth opened on May 20, 2025
  2

  

• ms_target_screening: only match based on mz if RT is NA

  RECETOX/galaxytools#661 · Filter by author hechth opened on May 20, 2025

• matchms: re-introduce mgf as format for similarity calculation

  RECETOX/galaxytools#657 · Filter by author hechth opened on May 12, 2025

• isolib: add relative isotope abundances to output table

  enhancementgood first issue
  RECETOX/galaxytools#653 · Filter by author hechth opened on May 6, 2025

• isolib: provide more adduct options

  documentationenhancement
  RECETOX/galaxytools#650 · Filter by author hechth opened on Apr 30, 2025
  1

• Implement wrapper for rmztab-m to extract the individual tables

  new tool requesttool-request
  RECETOX/galaxytools#640 · Filter by author hechth opened on Apr 2, 2025

• Implement galaxy tool wrapper for MSAC

  new tool request
  RECETOX/galaxytools#638 · Filter by author hechth opened on Apr 2, 2025

• Implement wrapper for unichrom

  RECETOX/galaxytools#636 · Filter by author hechth opened on Mar 21, 2025

• recetox-aplcms: parse parameter line tool

  enhancementnew tool request
  RECETOX/galaxytools#623 · Filter by author hechth opened on Dec 4, 2024
  

• recetox-xmsannotator: redundancy filtering

  RECETOX/galaxytools#622 · Filter by author hechth opened on Nov 18, 2024

• recetox-xmsannotator: compute confidence levels

  RECETOX/galaxytools#621 · Filter by author hechth opened on Nov 18, 2024