Improved the current SDA workflow to reach the North American runs with 6400 sites.#3340

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DongchenZ wants to merge 64 commits intoPecanProject:developfrom DongchenZ:develop

+1,731-110

Commits on Jul 22, 2024

add the template for the MCMC qsub job.
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added namespaces
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added qsub parallel analysis functions.
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Merge branch 'develop' of https://github.com/DongchenZ/pecan into develop
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Commits on Jul 23, 2024

include qsub analysis part into the main function.
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Update namespace.
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Update dependencies.
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Update dependencies.
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Update namespace.
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Apply suggestions.
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Commits on Jul 24, 2024

Update dependency.
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Update dependency.
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Commits on Sep 18, 2024

Pull from main branch.
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Removing the job file template.
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automatic add-up.
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Update the qsub option to submit analysis jobs.
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Using foreach to create Y and R.
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Resolve dimension issue.
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Add functions for initializing qsub job submissions during the general SDA workflow.
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Create a new workflow solely for the North American SDA runs.
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Add qsub functions for parallel SDA workflows.
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Upgrade the weight calculation function and fix some bugs.
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Update the script for matching the current progress with NA SDA runs.
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Rd file.
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Add Rd files.
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Remove hard-coded path.
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Adding SDA workflow for NA SDA runs.
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Commits on Sep 19, 2024

Update documentation associated with the SDA batch job submission features.
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Update doc.
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Update dependency.
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Update dependency.
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Commits on Sep 20, 2024

Update job completion detection.
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Add the verbose argument to the function of checking qsub job completion.
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Remove the library call from the functions.
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Add qsub statements to the creation of the settings in case you are using qsub status detection functions.
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Relocate qsub functions for the analysis part and optimize the function design.
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Update the roxygen structure.
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Update dependency.
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Update and fix namespaces.
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Fix GitHub checks.
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Fix function usage.
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Replace read function.
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Commits on Sep 21, 2024

Commits on Sep 23, 2024

Update roxygen text.
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Revert "Update roxygen text."
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Commits on Sep 30, 2024

Merge branch 'PecanProject:develop' into develop
DongchenZ
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Merge branch 'develop' of https://github.com/DongchenZ/pecan into develop
Dongchen Zhang
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Update roxygen.
Dongchen Zhang
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Revert the changes.
Dongchen Zhang
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Commits on Jan 13, 2025

Merge branch 'PecanProject:develop' into develop
DongchenZ
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Pass the printing when the job is finished.
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Bug fixes for the indexing when the scale is set to zero.
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Update the file deletion arguments.
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Add the feature of exporting all analysis and forecast results.
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Reduce the job time limit to request nodes more efficiently. Also, update the file deletion function even if there is no job.txt file.
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Remove the usage of the site name and the feature of parallel extraction due to the limitation of SoilGrids API.
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Attempt to fix github check issue.
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Attempt to fix github check issue.
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Resolve github check issue.
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Revert changes.
Dongchen Zhang
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Revert changes.
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Revert changes.
Dongchen Zhang
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