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PSulf/README.md

Hi, I'm Khoren πŸ‘‹

Environmental Biogeochemist | Data & Machine Learning Scientist | Ph.D. in Earth & Environmental Science

Postdoctoral Fellow @ University of Toronto Scarborough


πŸš€ About Me

  • 🌊 Aquatic biogeochemistry & elemental cycling (P, N, S, C dynamics)
  • πŸ“Š Applying data science, ML & bioinformatics to environmental datasets
  • πŸŽ“ Ph.D. in Earth & Environmental Science (Ben-Gurion University, Israel)
  • 🌱 Passionate about data-driven solutions for water quality & sustainability

πŸ›  Skills & Tools

Programming & Analytics: Python (NumPy, Pandas, Matplotlib, Seaborn, Plotly, scikit-learn), R, SQL (SQLite, MySQL)
Data Science & ML: Data wrangling, visualization, regression/classification, clustering, model evaluation
Software & Platforms: Git/GitHub, Jupyter, ArcGIS/QGIS, PHREEQC, OriginPro
Domain Expertise: Aquatic biogeochemistry, isotopic analysis (ICP-OES, GC/IRMS, HPLC, IC), environmental modeling
Also: Bioinformatics (QIIME2, RNA-seq), statistics, teaching & mentorship

Programming Languages

Python R SQL Bash

Machine Learning & Model Evaluation

scikit-learn XGBoost KNN SVM Gradient Boosting Cross-Validation Pipelines

Data Wrangling & Analytics

pandas NumPy SciPy statsmodels Dask PyArrow

Visualization

Matplotlib Seaborn Plotly Dash

Reproducibility & Workflow

Jupyter Conda VS Code Git GitHub

Data & Storage

SQLite PostgreSQL CSV/Parquet

Domain & Extras

ArcGIS

🧬 Bioinformatics β€” Tech Skills & Tools

Workflows & Reproducibility
Nextflow Conda/bioconda Docker

QC, Trimming & Pre-processing
FastQC Cutadapt Trimmomatic

Alignment & Assembly
Bowtie2 HISAT2

Microbiome / Metagenomics
QIIME2


πŸŽ“ Education

  • Data Science Certificate – Data Science Institute, University of Toronto (2025)
  • Ph.D. – Earth & Environmental Science, Ben-Gurion University, Israel (2020)
  • M.Sc. – Earth & Environmental Science, Ben-Gurion University, Israel (2016)
  • M.Sc. – Agriculture & Biotechnology, BIDR, Israel (2010)
  • B.Sc. – Ecology & Environmental Sciences, Yerevan State University, Armenia (2006)

πŸ“œ Certifications & Workshops

  • Compute Ontario (2025): Data Visualization in Bioinformatics (R); RNA-seq; Long-read Sequencing; Pathway Enrichment
  • Python Developer Certificate – Sololearn (2024)
  • MITACS (2025): Research & Development, Leadership, Communication, Networking
  • Microbial Genomics Workshop (UTSC, 2024); Bioinformatics Tools & Tricks (SickKids, 2023)

πŸ“‚ Selected Projects

  • Heart Disease ML Prediction – Random Forest, Gradient Boosting, XGBoost
  • Phosphorus Cycling in Hamilton Harbour – Integrated geochemical & microbial analysis
  • Bioreactor Field (Lake Erie watershed) – Nutrient-removal monitoring near greenhouse ponds
  • Methane dynamics in surface waters of Honey Harbour – Biogeochemistry

πŸ“Š GitHub Stats

Khoren's GitHub stats


πŸ“« Contact

βœ‰οΈ [email protected]
πŸ”— LinkedIn Β· Google Scholar

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