Build docker images #70
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| name: Build docker images | |
| on: | |
| push: | |
| tags: | |
| - '*' # Triggers the workflow only on version tags | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| jobs: | |
| build-cell-line-omics: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Build and push broad sanger omics | |
| uses: docker/build-push-action@v3 | |
| with: | |
| file: ./coderbuild/docker/Dockerfile.broad_sanger_omics | |
| tags: | | |
| sgosline/broad-sanger-omics:latest | |
| sgosline/broad-sanger-omics:${{ github.ref_name }} | |
| push: true | |
| platforms: linux/amd64 | |
| build-cell-line-exp: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Build and push broad sanger experiment | |
| uses: docker/build-push-action@v3 | |
| with: | |
| file: ./coderbuild/docker/Dockerfile.broad_sanger_exp | |
| tags: | | |
| sgosline/broad-sanger-exp:latest | |
| sgosline/broad-sanger-exp:${{ github.ref_name }} | |
| push: true | |
| platforms: linux/amd64 | |
| # Repeat the same tag update for the remaining steps: | |
| build-genes: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Build and push genes | |
| uses: docker/build-push-action@v3 | |
| with: | |
| file: ./coderbuild/docker/Dockerfile.genes | |
| tags: | | |
| sgosline/genes:latest | |
| sgosline/genes:${{ github.ref_name }} | |
| push: true | |
| platforms: linux/amd64 | |
| build-hcmi: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Build and push hcmi | |
| uses: docker/build-push-action@v3 | |
| with: | |
| file: ./coderbuild/docker/Dockerfile.hcmi | |
| tags: | | |
| sgosline/hcmi:latest | |
| sgosline/hcmi:${{ github.ref_name }} | |
| push: true | |
| platforms: linux/amd64 | |
| # build-cptac: | |
| # runs-on: ubuntu-latest | |
| # steps: | |
| # - name: Checkout | |
| # uses: actions/checkout@v3 | |
| # - name: Set up QEMU | |
| # uses: docker/setup-qemu-action@v3 | |
| # - name: Set up Docker Buildx | |
| # uses: docker/setup-buildx-action@v3 | |
| # - name: Login to DockerHub | |
| # uses: docker/login-action@v3 | |
| # with: | |
| # username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| # password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| # - name: Build and push cptac | |
| # uses: docker/build-push-action@v3 | |
| # with: | |
| # file: ./coderbuild/docker/Dockerfile.cptac | |
| # tags: | | |
| # sgosline/cptac:latest | |
| # sgosline/cptac:${{ github.ref_name }} | |
| # push: true | |
| # platforms: linux/amd64 | |
| build-mpnst: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Build and push mpnst | |
| uses: docker/build-push-action@v3 | |
| with: | |
| file: ./coderbuild/docker/Dockerfile.mpnst | |
| tags: | | |
| sgosline/mpnst:latest | |
| sgosline/mpnst:${{ github.ref_name }} | |
| push: true | |
| platforms: linux/amd64 | |
| build-beataml: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Build and push beataml | |
| uses: docker/build-push-action@v3 | |
| with: | |
| file: ./coderbuild/docker/Dockerfile.beataml | |
| tags: | | |
| sgosline/beataml:latest | |
| sgosline/beataml:${{ github.ref_name }} | |
| push: true | |
| platforms: linux/amd64 | |
| build-pancreatic: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Build and push pancreatic | |
| uses: docker/build-push-action@v3 | |
| with: | |
| file: ./coderbuild/docker/Dockerfile.pancreatic | |
| tags: | | |
| sgosline/pancreatic:latest | |
| sgosline/pancreatic:${{ github.ref_name }} | |
| push: true | |
| platforms: linux/amd64 | |
| build-upload: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Build and push upload | |
| uses: docker/build-push-action@v3 | |
| with: | |
| file: ./coderbuild/docker/Dockerfile.upload | |
| tags: | | |
| sgosline/upload:latest | |
| sgosline/upload:${{ github.ref_name }} | |
| push: true | |
| platforms: linux/amd64 | |
| build-sarcoma: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Build and push sarcoma | |
| uses: docker/build-push-action@v3 | |
| with: | |
| file: ./coderbuild/docker/Dockerfile.sarcoma | |
| tags: | | |
| sgosline/sarcoma:latest | |
| sgosline/sarcoma:${{ github.ref_name }} | |
| push: true | |
| platforms: linux/amd64 | |
| build-liver: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Build and push liver | |
| uses: docker/build-push-action@v3 | |
| with: | |
| file: ./coderbuild/docker/Dockerfile.liver | |
| tags: | | |
| sgosline/liver:latest | |
| sgosline/liver:${{ github.ref_name }} | |
| push: true | |
| platforms: linux/amd64 | |
| build-bladder: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Build and push bladder | |
| uses: docker/build-push-action@v3 | |
| with: | |
| file: ./coderbuild/docker/Dockerfile.bladder | |
| tags: | | |
| sgosline/bladder:latest | |
| sgosline/bladder:${{ github.ref_name }} | |
| push: true | |
| platforms: linux/amd64 | |
| build-colorectal: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Build and push colorectal | |
| uses: docker/build-push-action@v3 | |
| with: | |
| file: ./coderbuild/docker/Dockerfile.colorectal | |
| tags: | | |
| sgosline/colorectal:latest | |
| sgosline/colorectal:${{ github.ref_name }} | |
| push: true | |
| platforms: linux/amd64 | |
| build-novartis: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v3 | |
| - name: Set up QEMU | |
| uses: docker/setup-qemu-action@v3 | |
| - name: Set up Docker Buildx | |
| uses: docker/setup-buildx-action@v3 | |
| - name: Login to DockerHub | |
| uses: docker/login-action@v3 | |
| with: | |
| username: ${{ secrets.DOCKERHUB_USERNAME }} | |
| password: ${{ secrets.DOCKERHUB_PASSWORD }} | |
| - name: Build and push novartis | |
| uses: docker/build-push-action@v3 | |
| with: | |
| file: ./coderbuild/docker/Dockerfile.novartis | |
| tags: | | |
| sgosline/novartis:latest | |
| sgosline/novartis:${{ github.ref_name }} | |
| push: true | |
| platforms: linux/amd64 |