fus.Database

fus.Database

DATABASE Class for interfacing with open_tfus file storage

Properties

• path: [(1,1) string] Root location of database
• log: [fus.util.Logger] Logging utility

Methods

• set_connected_transducer(self, trans, options) Set the connected transducer.
• set_connnected_system(self, sys, options)
• trans = load_transducer(self, transducer_id) Load a transducer from the database.
• sys = load_system(self, sys_id) Load an UltrasoundSystem from the database.
• standoff = load_standoff(self, transducer_id, standoff_id) Load a standoff from the database.
• attrs = load_volume_attrs(self, subject, volume_ids) Load attributes of volumes from the database.
• volume = load_volume(self, subject, volume_id, options) Load a volume from the database.
• subject = load_subject(self, subject_id, options) Load a subject from the database.
• output = load_solution_output(self, session, plan_id, target_id) Load a treatment solution output from the database.
• analysis = load_solution_analysis(self, session, plan_id, target_id) Load a solution analysis from the database.
• varargout = load_solution(self, session, plan_id, target_id) Load a treatment solution from the database.
• session_info = load_session_info(self, subject_id, session_id) Load session information from the database.
• session = load_session(self, subject, session_id, options) Load a session from the database.
• data = load_session_solutions(self, session, options) Load solutions for a session.
• treatment_plans = load_all_plans(self) Load all treatment plans from the database.
• treatment_plan = load_plan(self, plan_id) Load a treatment plan from the database.
• filelist = list_files(self, options) List files in the database directory.
• transducer_ids = get_transducer_ids(self) Retrieve transducer IDs from the database.
• sys_info = get_system_info(self, sys_id) Retrieve information for ultrasound systems from the database.
• sys_ids = get_system_ids(self) Retrieve system IDs from the database.
• subject_table = get_subject_table(self, options) Retrieve subject information as a table from the database.
• session_table = get_session_table(self, subject_id, options) Retrieve session information as a table from the database.
• subject_ids = get_subject_ids(self) Retrieve subject IDs from the database.
• ids_by_plan = get_solutions(self, subject_id, session_id) Retrieve solution IDs by plan and target from the database.
• session_ids = get_session_ids(varargin) Retrieve session IDs for a subject from the database.
• plan_ids = get_plan_ids(self) Retrieve plan IDs from the database.
• trans = get_connected_transducer(self, options) Retrieve a connected transducer.
• sys_id = get_connected_systems(self) Retrieve IDs of connected ultrasound systems.
• subject_id = choose_subject(self, options) Interactively select a subject from the database.
• session_id = choose_session(self, subject, options) Interactively select a session from local data.
• volume_added = add_volume(self, subject, volume, options) Add a volume to a subject in the database.
• system_added = add_system(self, sys, options) Add an ultrasound system to the database.
• standoff_added = add_standoff(self, transducer_id, standoff, options) Add a standoff to the database.
• solution_added = add_solution(self, solution, subject_id, session_id, options) Add a treatment solution to the database.
• trans_added = add_transducer(self, trans, options) Add transducer to Database.
• subject_added = add_subject(self, subject, options) Add subject to Database.
• session_added = add_session(self, subject, session, options) Add Session to Database
• plan_added = add_plan(self, treatment_plan, options) Add a treatment plan to the database
• write_transducer_ids(self, transducer_ids)
• write_subject_ids(self, subject_ids)
• write_session_ids(self, subject_id, session_ids)
• write_plan_ids(self, plan_ids)
• volume_filename = get_volume_filename(self, subject_id, volume_id, options)
• transducers_filename = get_transducers_filename(self)
• transducer_filename = get_transducer_filename(self, transducer_id)
• system_filename = get_system_filename(self, system_id)
• systems_filename = get_systems_filename(self)
• subjects_filename = get_subjects_filename(self)
• subject_filename = get_subject_filename(self, subject_id)
• subject_dir = get_subject_dir(self, subject_id)
• standoff_filename = get_standoff_filename(self, transducer_id, standoff_id)
• solutions_filename = get_solutions_filename(self, subject_id, session_id)
• solution_filename = get_solution_filename(self, subject_id, session_id, plan_id, target_id, ext)
• sessions_filename = get_sessions_filename(self, subject_id)
• session_filename = get_session_filename(self, subject_id, session_id)
• session_dir = get_session_dir(self, subject_id, session_id)
• plan_filename = get_plan_filename(self, plan_id)
• plans_filename = get_plans_filename(self)
• connected_transducer_filename = get_connected_transducer_filename(self)
• connected_system_filename = get_connected_system_filename(self)
• db_path = get_default_path(options)
• user_dir = get_default_user_dir