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update documentation
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Maxim Moinat committed Aug 15, 2020
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7 changes: 5 additions & 2 deletions docs/WhiteRabbit.html
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Expand Up @@ -432,7 +432,7 @@ <h2>Installation</h2>
<li>Download the latest version of WhiteRabbit from Github: <a href="https://github.com/OHDSI/WhiteRabbit/releases/latest" class="uri">https://github.com/OHDSI/WhiteRabbit/releases/latest</a>.<br />
The packaged application can be found at the bottom of the page under assets, in a file called <em>WhiteRabbit_vX.X.X.zip</em> (where <code>X.X.X</code> is the latest version).</li>
<li>Unzip the download</li>
<li>Double-click on <code>dist/bin/whiteRabbit.bat</code> on Windows to start WhiteRabbit, and <code>dist/bin/whiteRabbit</code> on macOS and Linux.<br />
<li>Double-click on <code>bin/whiteRabbit.bat</code> on Windows to start WhiteRabbit, and <code>bin/whiteRabbit</code> on macOS and Linux.<br />
See <a href="#running-from-the-command-line">Running from the command line</a> for details on how to run from the command line instead.</li>
<li>Go to <a href="#using-the-application-functions">Using the Application Functions</a> for detailed instructions on how to make a scan of your data.</li>
</ol>
Expand Down Expand Up @@ -565,7 +565,10 @@ <h3>Performing the Scan</h3>
<div id="running-from-the-command-line" class="section level3">
<h3>Running from the command line</h3>
<p>For various reasons one could prefer to run WhiteRabbit from the command line. This is possible by specifying all the options one would normally select in the user interface in an .ini file. An example ini file can be found in the <a href="https://github.com/OHDSI/WhiteRabbit/blob/master/iniFileExamples/WhiteRabbit.ini">iniFileExamples folder</a>. Then, we can reference the ini file when calling WhiteRabbit from the command line:</p>
<p><code>java -jar WhiteRabbit.jar -ini WhiteRabbit.ini</code></p>
<p><strong>Windows</strong></p>
<p><code>bin/whiteRabbit.bat -ini WhiteRabbit.ini</code></p>
<p><strong>Mac/Unix</strong></p>
<p><code>bin/whiteRabbit -ini WhiteRabbit.ini</code></p>
</div>
<div id="reading-the-scan" class="section level3">
<h3>Reading the Scan</h3>
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10 changes: 8 additions & 2 deletions docs/WhiteRabbit.md
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Expand Up @@ -30,7 +30,7 @@ Once the scan report is created, this report can then be used in the Rabbit-In-A
1. Download the latest version of WhiteRabbit from Github: <https://github.com/OHDSI/WhiteRabbit/releases/latest>.
The packaged application can be found at the bottom of the page under assets, in a file called _WhiteRabbit_vX.X.X.zip_ (where `X.X.X` is the latest version).
2. Unzip the download
3. Double-click on `dist/bin/whiteRabbit.bat` on Windows to start WhiteRabbit, and `dist/bin/whiteRabbit` on macOS and Linux.
3. Double-click on `bin/whiteRabbit.bat` on Windows to start WhiteRabbit, and `bin/whiteRabbit` on macOS and Linux.
See [Running from the command line](#running-from-the-command-line) for details on how to run from the command line instead.
4. Go to [Using the Application Functions](#using-the-application-functions) for detailed instructions on how to make a scan of your data.

Expand Down Expand Up @@ -162,7 +162,13 @@ This is possible by specifying all the options one would normally select in the
An example ini file can be found in the [iniFileExamples folder](https://github.com/OHDSI/WhiteRabbit/blob/master/iniFileExamples/WhiteRabbit.ini).
Then, we can reference the ini file when calling WhiteRabbit from the command line:

```java -jar WhiteRabbit.jar -ini WhiteRabbit.ini```
**Windows**

```bin/whiteRabbit.bat -ini WhiteRabbit.ini```

**Mac/Unix**

```bin/whiteRabbit -ini WhiteRabbit.ini```

### Reading the Scan

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