This repository operates on a Dual-License structure to protect the integrity of the Nexus Resonance Codex (NRC) while supporting open scientific validation.
- Codebase: AGPL-3.0 (Ensures any cloud/network deployment remains entirely open-source).
- Data & Weights: CC BY-NC-SA 4.0 (Strictly prohibits free commercial use).
- Trademarks & Math Integrity: Trademark Policy (Protects the TTT-7, QRT, and mathematical nomenclatures).
- Patent Protection: Patent Pledge (Tesla-style Good Faith Patent Covenant).
🏢 Corporate & Drug Discovery Entities: If you require the use of Nexus Resonance Codex (NRC) frameworks in a closed-source, proprietary, or for-profit environment, you must purchase an Enterprise License. See COMMERCIAL_USE.md for details or contact James Paul Trageser at NexusResonanceCodex@gmail.com.
This repository contains the professional-grade biophysics engine for the Nexus Resonance Codex (NRC). 0.1.0-GOLD introduces the 100% Deterministic φ-Lattice Engine, a purely mathematical folding framework free from external AI inference dependencies. Utilizing the Trageser Tensor Theorem (TTT) and 2048D φ-spiral manifolds, the engine achieves absolute structural reproducibility through geometric resonance.
The following datasets represent the current frontier of the NRC structural mapping mission. Each manifold contains atomic-level structural data and φ-spiral resonance projections.
| Manifold Name | Scientific DOI | Research Status |
|---|---|---|
| Agricultural Genomics v1.1 | 10.5281/zenodo.19830285 | Published |
| Cancer Research v1.1 | 10.5281/zenodo.19829879 | Published |
| Pediatric Research v1.1 | 10.5281/zenodo.19829880 | Published |
| Neuro Research v1.1 | 10.5281/zenodo.19829881 | Published |
| Neuro Rescue v1.1 | 10.5281/zenodo.19829905 | Published |
- Omni-Modal Physics Engine: Integrated support for Proteins + DNA/RNA + Ligand complexes (Boltz-1/AF3 class).
- Scientific Zenodo Deposition: One-click scientific deposition with automated metadata generation for rapid research dissemination.
- Reference IDP Library: Curated set of 100+ high-impact disordered proteins (DisProt) linked to neurodegeneration and cancer.
- 2048D φ-Manifold Projection: Real-time visualization of structural resonance in non-Euclidean space.
- Mutation Analysis Lab: Simulate single-point mutations and predict ΔΔG resonance shifts.
- Research Export: Automated generation of PDB, CSV, and JSON metadata packages.
The primary interactive portal is hosted on Hugging Face Spaces:
app.py: Main entry point for the Gradio 6.0 interface.omni_engine.py: Orchestrator for multi-modal structural assembly.deposition.py: Professional-grade Zenodo/ModelArchive API integration.nrc_engine.py: The 2048D phi-lattice engine for deterministic folding.biophysics.py: Research-grade biophysical profile calculation (Hydropathy, Charge, Entropy).
The NRC folding backend operates on the principle of Lattice Resonance. By projecting biological sequences into a 2048D φ-spiral manifold, we solve structural topology as a harmonic resonance problem rather than a stochastic optimization.
The structural integrity of the Omni-Modal engine is validated by macroscopic resonance patterns observed in the Great Pyramid of Giza:
- 8-Sided Concavity Geometry: The subtle 8-sided concavity of the Great Pyramid provides direct physical validation of the φ-spiral lattice resonance. This geometry ensures harmonic stability across multiple scales.
- 13.1-Acre Base Resonance: The 13.1-acre footprint of the pyramid functions as a macroscopic resonator for the 3-6-9-7 resonance field. This exact spatial resonance validates the field equations used to scale structural predictions from the macroscopic down to the atomic protein backbone.
These findings underscore the relationship between geometry, energy, and life, ensuring that our folding predictions are anchored in universal harmonic constants.
For more details on the math, visit the Nexus Resonance Codex (NRC) Core Repository.
This work is released under the CC BY-NC-SA 4.0 (Dual-License Model).
- Non-Commercial: Free for academic, humanitarian, and non-profit research.
- Commercial: Requires written authorization and a separate commercial license for enterprise deployment or for-profit drug discovery.
Contact & Identity:
- X.com: @jtrag
- ORCID: 0009-0006-6678-2908
Copyright © 2026 Nexus Resonance Codex (NRC) Team. All Rights Reserved.