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Merge pull request #336 from NeurodataWithoutBorders/instructor-profiles
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Instructor profiles
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bendichter authored Jan 13, 2025
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122 changes: 91 additions & 31 deletions HCK24_2025_Janelia_NDRH/README.md
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[//]: # (* [Report](#report))
* [Dates and Location](#dates-and-location)
* [Objective](#objective)
* [Instructors](#instructors)
* [Logistics](#logistics)
* [Organizing Committee](#organizing-committee)
* [Additional Instructors](#additional-instructors)
* [Resources](#resources)
* [What to bring?](#what-to-bring)
* [Schedule](#schedule)
@@ -21,8 +20,6 @@
[//]: # ()
[//]: # (The final report for NeuroDataReHack 2024 is now available online at [[PDF](https://drive.usercontent.google.com/u/0/uc?id=1QYw9jmIpKPXPMLmhTnVIIWgbWHL5tPS3&export=download)].)



## Dates and Location

- **Dates:** July 14-18, 2025
@@ -40,13 +37,11 @@ them on how to maximally utilize the archive and the NWB standard to incorporate
workflows. Feedback from attendees will be used to improve the software and data standard to better enable
reanalysis workflows.


Prior to the workshop, we are organizing [Open Neurodata Showcase](../HCK23_2025_OpenNeurodataShowcase/README.md) where
attendees can meet the contributors behind the neurophysiology datasets and explore virtual posters. Visit the
[event page](../HCK23_2025_OpenNeurodataShowcase/README.md#application) to sign up and read more about this feature
event.


Example projects include but are not limited to:
* Determine whether your result is present in another species or brain area.
* Showcase the capabilities of your tool or analysis on existing data from another lab.
@@ -60,20 +55,94 @@ awards $50,000 (USD) of funding to continue data reanalysis projects that come o
This event will primarily focus on analyzing existing data in NWB and on DANDI, **not** converting data to NWB. If
you are interested in learning how to convert data, consider signing up for an NWB Data Conversion Workshop.

## Instructors

<div class="instructor-grid" style="display: grid; grid-template-columns: repeat(auto-fit, minmax(300px, 1fr)); gap: 2rem; margin: 2rem 0;">

<div class="instructor-card" style="border: 1px solid #ddd; border-radius: 8px; padding: 1.5rem; background: #fff; box-shadow: 0 2px 4px rgba(0,0,0,0.1);">
<img src="images/instructors/ben_dichter.jpeg" alt="Benjamin Dichter" style="width: 200px; height: 200px; border-radius: 50%; margin: 0 auto 1rem; display: block; object-fit: cover;">
<h3 style="margin: 0; text-align: center; color: #333;">Benjamin Dichter, Ph.D.</h3>
<p style="text-align: center; color: #666; margin: 0.5rem 0;">Program Chair<br>CatalystNeuro</p>
<div style="margin-top: 1rem;">
<strong>Contact:</strong>
<p style="margin: 0.5rem 0; text-align: center;">ben.dichter [at] catalystneuro [dot] com</p>
</div>
</div>

<div class="instructor-card" style="border: 1px solid #ddd; border-radius: 8px; padding: 1.5rem; background: #fff; box-shadow: 0 2px 4px rgba(0,0,0,0.1);">
<img src="images/instructors/stephanie_prince.png" alt="Stephanie Prince" style="width: 200px; height: 200px; border-radius: 50%; margin: 0 auto 1rem; display: block; object-fit: cover;">
<h3 style="margin: 0; text-align: center; color: #333;">Stephanie Prince, Ph.D.</h3>
<p style="text-align: center; color: #666; margin: 0.5rem 0;">Program Chair<br>Lawrence Berkeley National Laboratory</p>
</div>

<div class="instructor-card" style="border: 1px solid #ddd; border-radius: 8px; padding: 1.5rem; background: #fff; box-shadow: 0 2px 4px rgba(0,0,0,0.1);">
<img src="images/instructors/jeremy_magland.avif" alt="Jeremy Magland" style="width: 200px; height: 200px; border-radius: 50%; margin: 0 auto 1rem; display: block; object-fit: cover;">
<h3 style="margin: 0; text-align: center; color: #333;">Jeremy Magland, Ph.D.</h3>
<p style="text-align: center; color: #666; margin: 0.5rem 0;">Senior Data Scientist<br>Numerical Analysis, CCM<br>Flatiron Institute</p>
<div style="margin-top: 1rem;">
<strong>Lead developer of:</strong>
<ul style="margin: 0.5rem 0; padding-left: 1.5rem;">
<li>Neurosift</li>
<li>FigURL</li>
<li>Dendro</li>
</ul>
</div>
</div>

<div class="instructor-card" style="border: 1px solid #ddd; border-radius: 8px; padding: 1.5rem; background: #fff; box-shadow: 0 2px 4px rgba(0,0,0,0.1);">
<img src="images/instructors/carsen_stringer.jpg" alt="Carsen Stringer" style="width: 200px; height: 200px; border-radius: 50%; margin: 0 auto 1rem; display: block; object-fit: cover;">
<h3 style="margin: 0; text-align: center; color: #333;">Carsen Stringer, Ph.D.</h3>
<p style="text-align: center; color: #666; margin: 0.5rem 0;">Group Leader<br>HHMI Janelia Research Campus</p>
<div style="margin-top: 1rem;">
<strong>Lead developer of:</strong>
<ul style="margin: 0.5rem 0; padding-left: 1.5rem;">
<li>rastermap</li>
<li>suite2p</li>
<li>facemap</li>
<li>cellpose</li>
<li>and more</li>
</ul>
</div>
</div>

<div class="instructor-card" style="border: 1px solid #ddd; border-radius: 8px; padding: 1.5rem; background: #fff; box-shadow: 0 2px 4px rgba(0,0,0,0.1);">
<img src="images/instructors/guillaume_viejo.avif" alt="Guillaume Viejo" style="width: 200px; height: 200px; border-radius: 50%; margin: 0 auto 1rem; display: block; object-fit: cover;">
<h3 style="margin: 0; text-align: center; color: #333;">Guillaume Viejo, Ph.D.</h3>
<p style="text-align: center; color: #666; margin: 0.5rem 0;">Data Scientist<br>CCN, Flatiron Institute</p>
<div style="margin-top: 1rem;">
<strong>Lead developer of:</strong>
<ul style="margin: 0.5rem 0; padding-left: 1.5rem;">
<li>pynapple</li>
</ul>
</div>
</div>

<div class="instructor-card" style="border: 1px solid #ddd; border-radius: 8px; padding: 1.5rem; background: #fff; box-shadow: 0 2px 4px rgba(0,0,0,0.1);">
<img src="images/instructors/carter_peene.jpg" alt="Carter Peene" style="width: 200px; height: 200px; border-radius: 50%; margin: 0 auto 1rem; display: block; object-fit: cover;">
<h3 style="margin: 0; text-align: center; color: #333;">Carter Peene</h3>
<p style="text-align: center; color: #666; margin: 0.5rem 0;">Data Analyst I<br>Allen Institute for Neural Dynamics</p>
<div style="margin-top: 1rem;">
<strong>Lead developer of:</strong>
<ul style="margin: 0.5rem 0; padding-left: 1.5rem;">
<li>OpenScope Databook</li>
</ul>
</div>
</div>

</div>

## Eligibility

This course is intended for PhD students, postdoctoral researchers, principal investigators, or similar.
Applicants should have basic programming experience in Python or MATLAB and experience with neurophysiology research.


## Application

Space for the event is limited. Apply to attend NeuroDataReHack 2025 [here](https://forms.gle/cR9sm5wjAt8oqTaT7).

* Application deadline: Feb 12
* Notification of admission decisions: March 15


## Logistics

Thanks to the generous sponsorship of The Janelia Research Campus, this event will be free to participants:
@@ -84,24 +153,15 @@ Thanks to the generous sponsorship of The Janelia Research Campus, this event wi
* You will be responsible for booking your own flight and transportation to Janelia Research Campus.
* You will be responsible for determining visa and/or healthcare requirements for travel to the United States.

## Organizing Committee

**Program chairs:**
* Benjamin Dichter, CatalystNeuro
* Oliver Rübel, Lawrence Berkeley National Laboratory
* Ryan Ly, Lawrence Berkeley National Laboratory
* Steph Prince, Lawrence Berkeley National Laboratory

If you have any questions about this event, please contact Ben at ben.dichter [at] catalystneuro [dot] com

## Additional Instructors

* Jeremy Magland, Ph.D.: Senior Data Scientist, Numerical Analysis, CCM, Flatiron Institute
* Lead developer of Neurosift, FigURL, and Dendro
* Carsen Stringer, Ph.D.: Group leader at HHMI Janelia Research Campus
* Lead developer: rastermap, suite2p, facemap, cellpose, and more
* Guillaume Viejo, Ph.D.: Data Scientist, CCN, Flatiron Institute
* Lead developer: pynapple
<!-- Note: Profile pictures need to be added to the images/instructors directory with the following filenames:
- ben_dichter.jpg
- steph_prince.jpg
- jeremy_magland.jpg
- carsen_stringer.jpg
- guillaume_viejo.jpg
- carter_peene.jpg
The images should be square format, ideally 400x400 pixels or larger. -->

## Resources

@@ -144,8 +204,8 @@ NeuroDataReHack 2024 is a inspiring tour to the ecosystem that the NWB and DANDI

----------

The sessions on the DANDI archive and NWB format and accessible analysis tools were extremely helpful and made the tools fairly easy to use considering how powerful they are. The organizers and presenters did a great job breaking down complex topics and were really approachable and helpful throughout. Plus, getting to meet people from all over with similar interests was great. Big thanks to everyone who put this together – it was educational and fun.
- Keith Van Antwerp, Georgia Tech
The sessions on the DANDI archive and NWB format and accessible analysis tools were extremely helpful and made the tools fairly easy to use considering how powerful they are. The organizers and presenters did a great job breaking down complex topics and were really approachable and helpful throughout. Plus, getting to meet people from all over with similar interests was great. Big thanks to everyone who put this together – it was educational and fun.
- Keith Van Antwerp, Georgia Tech

----------

@@ -173,12 +233,12 @@ owned rights.

Reference herein to any specific commercial product, process, or service by its trade name, trademark, manufacturer,
or otherwise, does not necessarily constitute or imply its endorsement, recommendation, or favoring by the United
States Government or any agency thereof, or The Regents of the University of California. Use of the Laboratory or
Universitys name for endorsements is prohibited.
States Government or any agency thereof, or The Regents of the University of California. Use of the Laboratory or
University's name for endorsements is prohibited.

The views and opinions of authors expressed herein do not necessarily state or reflect those of the United States
Government or any agency thereof or The Regents of the University of California. Neither Berkeley Lab nor its
Government or any agency thereof or The Regents of the University of California. Neither Berkeley Lab nor its
employees are agents of the US Government.

Berkeley Lab web pages link to many other websites. Such links do not constitute an endorsement of the content or
Berkeley Lab web pages link to many other websites. Such links do not constitute an endorsement of the content or
company and we are not responsible for the content of such links.
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