Fix "Working outside of application context" error, plus fix incorrect arg ordering for rotate by serial number

lemur/acme_providers/cli.py

@@ -1,11 +1,12 @@
-import time
 import json
+import time
+
 import arrow
 import click
-
 from flask import current_app
-
+from flask.cli import with_appcontext
 from sentry_sdk import capture_exception
+
 from lemur.common.utils import check_validation
 from lemur.constants import SUCCESS_METRIC_STATUS
 from lemur.plugins import plugins
@@ -14,6 +15,7 @@
 
 
 @click.group(name="acme", help="Handles all ACME related tasks")
+@with_appcontext
 def cli():
     pass
 

lemur/certificates/cli.py

@@ -11,6 +11,7 @@
 import arrow
 import click
 from flask import current_app
+from flask.cli import with_appcontext
 from flask_principal import Identity, identity_changed
 from sentry_sdk import capture_exception
 from sqlalchemy import or_
@@ -50,6 +51,7 @@
 
 
 @click.group(name="certificates", help="Handles all certificate related tasks.")
+@with_appcontext
 def cli():
     pass
 
@@ -577,7 +579,7 @@ def rotate_region(endpoint_name, new_certificate_name, old_certificate_name, mes
     help="Persist changes.",
 )
 def reissue_command(old_certificate_name, serial_numbers, notify, commit):
-    reissue(old_certificate_name, serial_numbers, notify, commit)
+    reissue(old_certificate_name, notify, commit, serial_numbers)
 
 
 def reissue(old_certificate_name, notify, commit, serial_numbers):

lemur/dns_providers/cli.py

@@ -1,15 +1,17 @@
 import sys
-import click
 
+import click
+from flask.cli import with_appcontext
 from sentry_sdk import capture_exception
 
 from lemur.constants import SUCCESS_METRIC_STATUS
-from lemur.plugins.lemur_acme.acme_handlers import AcmeDnsHandler
 from lemur.dns_providers.service import get_all_dns_providers, set_domains
 from lemur.extensions import metrics
+from lemur.plugins.lemur_acme.acme_handlers import AcmeDnsHandler
 
 
 @click.group(name="dns_providers", help="Iterates through all DNS providers and sets DNS zones in the database.")
+@with_appcontext
 def cli():
     pass
 

lemur/notifications/cli.py

@@ -6,20 +6,21 @@
 .. moduleauthor:: Kevin Glisson <[email protected]>
 """
 import click
-
 from flask import current_app
+from flask.cli import with_appcontext
 from sentry_sdk import capture_exception
 
 from lemur.certificates.service import get_expiring_deployed_certificates
 from lemur.constants import SUCCESS_METRIC_STATUS, FAILURE_METRIC_STATUS
 from lemur.extensions import metrics
+from lemur.notifications.messaging import send_authority_expiration_notifications
 from lemur.notifications.messaging import send_expiration_notifications, \
     send_expiring_deployed_certificate_notifications
-from lemur.notifications.messaging import send_authority_expiration_notifications
 from lemur.notifications.messaging import send_security_expiration_summary
 
 
 @click.group(name="notify", help="Handles notification related tasks.")
+@with_appcontext
 def cli():
     pass
 

lemur/pending_certificates/cli.py

@@ -5,11 +5,12 @@
 .. moduleauthor:: Curtis Castrapel <[email protected]>
 """
 
-import click
 import copy
 import sys
 
+import click
 from flask import current_app
+from flask.cli import with_appcontext
 
 from lemur.authorities.service import get as get_authority
 from lemur.constants import ACME_ADDITIONAL_ATTEMPTS
@@ -19,6 +20,7 @@
 
 
 @click.group(name="pending_certs", help="Handles pending certificate related tasks.")
+@with_appcontext
 def cli():
     pass
 

lemur/policies/cli.py

@@ -6,11 +6,13 @@
 .. moduleauthor:: Kevin Glisson <[email protected]>
 """
 import click
+from flask.cli import with_appcontext
 
 from lemur.policies import service as policy_service
 
 
 @click.group(name="policy", help="Handles all policy related tasks.")
+@with_appcontext
 def cli():
     pass
 

lemur/reporting/cli.py

@@ -6,13 +6,14 @@
 .. moduleauthor:: Kevin Glisson <[email protected]>
 """
 import click
-
+from flask.cli import with_appcontext
 from tabulate import tabulate
 
 from lemur.reporting.service import fqdns, expiring_certificates
 
 
 @click.group(name="report", help="Reporting related tasks.")
+@with_appcontext
 def cli():
     pass
 

lemur/sources/cli.py

@@ -5,28 +5,28 @@
     :license: Apache, see LICENSE for more details.
 .. moduleauthor:: Kevin Glisson <[email protected]>
 """
-from copy import deepcopy
-import click
 import sys
 import time
+from copy import deepcopy
 
-from tabulate import tabulate
+import click
 from flask import current_app
+from flask.cli import with_appcontext
 from sentry_sdk import capture_exception
+from tabulate import tabulate
 
+from lemur.certificates import service as certificate_service
 from lemur.constants import SUCCESS_METRIC_STATUS, FAILURE_METRIC_STATUS
-
+from lemur.destinations import service as dest_service
 from lemur.extensions import metrics
 from lemur.plugins.base import plugins
 from lemur.plugins.utils import get_plugin_option, set_plugin_option
-
-from lemur.destinations import service as dest_service
 from lemur.sources import service as source_service
 from lemur.users import service as user_service
-from lemur.certificates import service as certificate_service
 
 
 @click.group(name="source", help="Handles all source related tasks.")
+@with_appcontext
 def cli():
     pass