chore: use genre to categorize resource catalogs

NIAID-Data-Ecosystem · May 31, 2024 · 7917a62 · 7917a62
1 parent 093aa0c
commit 7917a62
Show file tree

Hide file tree

Showing 4 changed files with 33 additions and 20 deletions.
diff --git a/configs/repositories.json b/configs/repositories.json
@@ -13,7 +13,7 @@
     {
       "id": "AccessClinicalData@NIAID",
       "label": "AccessClinicalData@NIAID",
-      "genre": ["clinical"],
+
       "icon": "/assets/NIH-logo.png",
       "imageURL": "/assets/resources/access-clinical.png",
       "isNIAID": true,
@@ -43,7 +43,7 @@
     {
       "id": "ClinEpiDB",
       "label": "ClinEpiDB",
-      "genre": ["clinical", "epidemiology"],
+
       "icon": "/assets/resources/clinepi.jpeg",
       "imageURL": "/assets/resources/clinepi.jpeg",
       "isNIAID": true,
@@ -109,23 +109,23 @@
     {
       "id": "HuBMAP",
       "label": "HuBMAP",
-      "genre": ["physiology", "imaging", "omics", "spectrometry"],
+
       "icon": "/assets/resources/hubmap-icon.jpg",
       "imageURL": "/assets/resources/hubmap.png",
       "type": "generalist"
     },
     {
       "id": "Human Cell Atlas",
       "label": "Human Cell Atlas",
-      "genre": ["physiology", "omics"],
+
       "icon": "/assets/resources/hca-icon.png",
       "imageURL": "/assets/resources/hca.png",
       "type": "generalist"
     },
     {
       "id": "ImmPort",
       "label": "ImmPort",
-      "genre": ["omics", "clinical", "imaging", "immunology", "molecular"],
+
       "icon": "/assets/resources/immport-icon.jpg",
       "imageURL": "/assets/resources/immport.png",
       "isNIAID": true,
@@ -134,7 +134,7 @@
     {
       "id": "LINCS",
       "label": "BD2K-LINCS DCIC",
-      "genre": ["imaging", "omics", "molecular"],
+
       "icon": "/assets/resources/lincs-icon.jpg",
       "imageURL": "/assets/resources/lincs.png",
       "type": "generalist"
@@ -143,7 +143,7 @@
       "id": "MalariaGEN",
       "label": "MalariaGEN",
       "imageURL": "/assets/resources/malariagen.svg",
-      "type": "generalist"
+      "type": "iid"
     },
     {
       "id": "Mendeley",
@@ -155,7 +155,7 @@
     {
       "id": "MicrobiomeDB",
       "label": "MicrobiomeDB",
-      "genre": ["omics"],
+
       "icon": "/assets/resources/microbiome.png",
       "imageURL": "/assets/resources/microbiome.png",
       "isNIAID": true,
@@ -164,7 +164,7 @@
     {
       "id": "NCBI GEO",
       "label": "NCBI GEO",
-      "genre": ["omics"],
+
       "icon": "/assets/resources/geo.gif",
       "imageURL": "/assets/resources/geo.gif",
       "type": "generalist"
@@ -179,7 +179,7 @@
     {
       "id": "NCBI SRA",
       "label": "NCBI Sequence Read Archive",
-      "genre": ["omics"],
+
       "icon": "/assets/resources/ncbi-sra.png",
       "imageURL": "/assets/resources/ncbi-sra.png",
       "type": "generalist"
@@ -210,7 +210,7 @@
     {
       "id": "Omics Discovery Index (OmicsDI)",
       "label": "Omics Discovery Index (OmicsDI)",
-      "genre": ["omics"],
+
       "icon": "/assets/resources/omics.png",
       "imageURL": "/assets/resources/omics.png",
       "type": "generalist"
@@ -226,7 +226,7 @@
     {
       "id": "Qiita",
       "label": "Qiita",
-      "genre": ["omics"],
+
       "icon": "/assets/resources/qiita.png",
       "imageURL": "/assets/resources/qiita.png",
       "type": "iid"
@@ -235,15 +235,15 @@
     {
       "id": "ReframeDB",
       "label": "ReframeDB",
-      "genre": ["molecular"],
+
       "icon": "/assets/resources/reframedb.png",
       "imageURL": "/assets/resources/reframedb.png",
       "type": "iid"
     },
     {
       "id": "VDJServer",
       "label": "VDJServer",
-      "genre": ["omics"],
+
       "icon": "/assets/resources/vdjserver.png",
       "imageURL": "/assets/resources/vdjserver.png",
       "isNIAID": true,
@@ -252,7 +252,7 @@
     {
       "id": "VEuPathDB",
       "label": "VEuPathDB",
-      "genre": ["omics"],
+
       "icon": "/assets/resources/veupathdb-icon.jpg",
       "imageURL": "/assets/resources/VEuPathDB.png",
       "isNIAID": true,
@@ -261,7 +261,7 @@
     {
       "id": "Vivli",
       "label": "Vivli",
-      "genre": ["clinical"],
+
       "icon": "/assets/resources/vivli-icon.jpeg",
       "imageURL": "/assets/resources/vivli.png",
       "type": "generalist"

diff --git a/src/hooks/api/useRepoData.ts b/src/hooks/api/useRepoData.ts
@@ -11,7 +11,13 @@ export interface Repository {
   type: 'Repository';
   icon?: string;
   name: string;
-  domain: 'generalist' | 'iid';
+  domain:
+    | 'generalist'
+    | 'iid'
+    | 'basic science'
+    | 'biomedical'
+    | 'other'
+    | 'metadata';
   url?: string | null;
 }
 

diff --git a/src/hooks/api/useResourceCatalogs.ts b/src/hooks/api/useResourceCatalogs.ts
@@ -11,7 +11,13 @@ export interface ResourceCatalog {
   conditionsOfAccess?: FormattedResource['conditionsOfAccess'];
   type: 'ResourceCatalog';
   name: FormattedResource['name'];
-  domain: 'generalist' | 'iid';
+  domain:
+    | 'generalist'
+    | 'iid'
+    | 'basic science'
+    | 'biomedical'
+    | 'other'
+    | 'metadata';
   url?: FormattedResource['url'];
 }
 
@@ -27,6 +33,7 @@ export function useResourceCatalogs({
     'abstract',
     'collectionType',
     'conditionsOfAccess',
+    'genre',
     'name',
     'url',
   ],
@@ -62,7 +69,7 @@ export function useResourceCatalogs({
           conditionsOfAccess: catalog.conditionsOfAccess,
           type: catalog['@type'],
           name: catalog.name,
-          domain: 'iid',
+          domain: catalog.genre.toLowerCase() as ResourceCatalog['domain'],
           url: catalog.url,
         }));
       },

diff --git a/src/views/home/components/TableWithSearch/helpers.tsx b/src/views/home/components/TableWithSearch/helpers.tsx
@@ -14,7 +14,7 @@ export const formatDomainName = (type: TableData['domain']) => {
   } else if (type === 'generalist') {
     return 'Generalist';
   } else {
-    return type;
+    return type.charAt(0).toUpperCase() + type.slice(1);
   }
 };