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@NCI-CGR

NCI-Cancer Genomics Research Lab/FNLCR

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  1. MoCCA-SV MoCCA-SV Public

    A Flexible Ensemble Framework for Structural Variant Analysis

    Python 6 1

  2. GEMSCAN GEMSCAN Public

    Joint variant calling with GATK4 HaplotypeCaller, Google DeepVariant 1.0.0 and Strelka2, coordinated via Snakemake.

    Python 6 9

  3. cgrHPV16 cgrHPV16 Public

    Python 5 1

  4. TypeSeqHPV TypeSeqHPV Public

    NCI CGR laboratory HPV typing analysis workflows

    R 5 4

  5. QIIME_pipeline QIIME_pipeline Public

    CGR's QIIME microbiome pipeline

    Python 3 3

  6. plco-analysis plco-analysis Public

    Primary workflow for the PLCO "Atlas" project

    Shell 3 4

Repositories

Showing 10 of 64 repositories
  • ExomeQcPipeline Public
    NCI-CGR/ExomeQcPipeline’s past year of commit activity
    Python 0 1 1 0 Updated Apr 3, 2025
  • TriosCompass_v2 Public

    Trios analysis workflow written in Snakemake

    NCI-CGR/TriosCompass_v2’s past year of commit activity
    HTML 2 MIT 0 1 1 Updated Mar 28, 2025
  • GwasQcPipeline Public

    The CGR GWAS QC processing workflow.

    NCI-CGR/GwasQcPipeline’s past year of commit activity
    Python 0 2 29 (2 issues need help) 0 Updated Mar 27, 2025
  • Pacbio_HiFi_Somatic_WDL_Pipeline Public

    A somatic variant-calling workflow (tumor-only or matched tumor/normal) for HiFi data

    NCI-CGR/Pacbio_HiFi_Somatic_WDL_Pipeline’s past year of commit activity
    0 0 0 0 Updated Mar 26, 2025
  • TypeSeq2 Public
    NCI-CGR/TypeSeq2’s past year of commit activity
    R 1 0 0 0 Updated Mar 25, 2025
  • HPV_Guanacaste_CostaRica_Longitudinal_Study Public

    Includes the variant calling pipeline and data for the HPV natural history study

    NCI-CGR/HPV_Guanacaste_CostaRica_Longitudinal_Study’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Mar 24, 2025
  • MineSV Public
    NCI-CGR/MineSV’s past year of commit activity
    Python 0 GPL-3.0 0 4 0 Updated Mar 6, 2025
  • ITSxpress-docs Public
    NCI-CGR/ITSxpress-docs’s past year of commit activity
    0 0 0 0 Updated Feb 24, 2025
  • PLP_prediction_workflow Public
    NCI-CGR/PLP_prediction_workflow’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 9, 2024
  • GenCompass_WGS Public

    GenCompass: Germline Ensemble Calling of Mutations with Parabricks Accelerated Software Suite

    NCI-CGR/GenCompass_WGS’s past year of commit activity
    WDL 0 0 0 0 Updated Nov 20, 2024
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