DEVOPS-690: poetry2 migration

.codespellignore

@@ -1,2 +1,3 @@
 ba
 nd
+astroid

.github/workflows/python_analysis.yml

@@ -24,14 +24,14 @@ concurrency:
 jobs:
   call-workflow-static-analysis:
     name: Static analysis
-    uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-static_analysis.yml@main
+    uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-static_analysis.yml@DEVOPS-690-poetry2
     with:
       package-manager: 'conda'
       app-name: 'geoapps_utils'
       python-version: '3.10'
   call-workflow-pytest:
     name: Pytest
-    uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest.yml@main
+    uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest.yml@DEVOPS-690-poetry2
     with:
       package-manager: 'conda'
       python-versions: '["3.10", "3.11", "3.12"]'

.pre-commit-config.yaml

@@ -11,6 +11,11 @@ ci:
     autoupdate_schedule: monthly
 
 repos:
+-   repo: https://github.com/python-poetry/poetry
+    rev: 2.1.3
+    hooks:
+    -   id: poetry-check
+        args: [--lock]
 -   repo: https://github.com/hadialqattan/pycln
     rev: v2.5.0
     hooks:

environments/py-3.10-linux-64-dev.conda.lock.yml

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: b71a3789f89cd0f59eb752d8a16a630f5e5bf5a59582226124bbfcca179012b4
+# input_hash: 8f70d81d47096021c15198e0a9db361184aabf56db353452c7852e436c5065f2
 
 channels:
   - conda-forge
@@ -9,54 +9,58 @@ dependencies:
   - _libgcc_mutex=0.1=conda_forge
   - _openmp_mutex=4.5=2_gnu
   - annotated-types=0.7.0=pyhd8ed1ab_1
-  - astroid=3.3.9=py310hff52083_0
+  - astroid=3.3.11=py310hff52083_0
   - bzip2=1.0.8=h4bc722e_7
-  - c-ares=1.34.4=hb9d3cd8_0
-  - ca-certificates=2025.1.31=hbcca054_0
+  - c-ares=1.34.5=hb9d3cd8_0
+  - ca-certificates=2025.7.14=hbd8a1cb_0
   - cached-property=1.5.2=hd8ed1ab_1
   - cached_property=1.5.2=pyha770c72_1
   - colorama=0.4.6=pyhd8ed1ab_1
-  - coverage=7.8.0=py310h89163eb_0
-  - dill=0.3.9=pyhd8ed1ab_1
-  - exceptiongroup=1.2.2=pyhd8ed1ab_1
-  - freetype=2.13.3=h48d6fc4_0
-  - h5py=3.13.0=nompi_py310h60e0fe6_100
-  - hdf5=1.14.3=nompi_h2d575fe_109
+  - coverage=7.9.2=py310h89163eb_0
+  - dill=0.4.0=pyhd8ed1ab_0
+  - exceptiongroup=1.3.0=pyhd8ed1ab_0
+  - freetype=2.13.3=ha770c72_1
+  - h5py=3.14.0=nompi_py310hea1e86d_100
+  - hdf5=1.14.6=nompi_h6e4c0c1_102
+  - icu=75.1=he02047a_0
   - iniconfig=2.0.0=pyhd8ed1ab_1
-  - isort=6.0.1=pyhd8ed1ab_0
+  - isort=6.0.1=pyhd8ed1ab_1
   - jinja2=3.1.6=pyhd8ed1ab_0
   - keyutils=1.6.1=h166bdaf_0
   - krb5=1.21.3=h659f571_0
   - lcms2=2.17=h717163a_0
-  - ld_impl_linux-64=2.43=h712a8e2_4
-  - lerc=4.0.0=h27087fc_0
-  - libaec=1.1.3=h59595ed_0
-  - libblas=3.9.0=31_h59b9bed_openblas
-  - libcblas=3.9.0=31_he106b2a_openblas
-  - libcurl=8.13.0=h332b0f4_0
-  - libdeflate=1.23=h4ddbbb0_0
+  - ld_impl_linux-64=2.44=h1423503_1
+  - lerc=4.0.0=h0aef613_1
+  - libaec=1.1.4=h3f801dc_0
+  - libblas=3.9.0=32_h59b9bed_openblas
+  - libcblas=3.9.0=32_he106b2a_openblas
+  - libcurl=8.14.1=h332b0f4_0
+  - libdeflate=1.24=h86f0d12_0
   - libedit=3.1.20250104=pl5321h7949ede_0
   - libev=4.33=hd590300_2
+  - libexpat=2.7.0=h5888daf_0
   - libffi=3.4.6=h2dba641_1
-  - libgcc=14.2.0=h767d61c_2
-  - libgcc-ng=14.2.0=h69a702a_2
-  - libgfortran=14.2.0=h69a702a_2
-  - libgfortran5=14.2.0=hf1ad2bd_2
-  - libgomp=14.2.0=h767d61c_2
-  - libjpeg-turbo=3.0.0=hd590300_1
-  - liblapack=3.9.0=31_h7ac8fdf_openblas
-  - liblzma=5.8.1=hb9d3cd8_0
+  - libfreetype=2.13.3=ha770c72_1
+  - libfreetype6=2.13.3=h48d6fc4_1
+  - libgcc=15.1.0=h767d61c_3
+  - libgcc-ng=15.1.0=h69a702a_3
+  - libgfortran=15.1.0=h69a702a_3
+  - libgfortran5=15.1.0=hcea5267_3
+  - libgomp=15.1.0=h767d61c_3
+  - libjpeg-turbo=3.1.0=hb9d3cd8_0
+  - liblapack=3.9.0=32_h7ac8fdf_openblas
+  - liblzma=5.8.1=hb9d3cd8_2
   - libnghttp2=1.64.0=h161d5f1_0
-  - libnsl=2.0.1=hd590300_0
-  - libopenblas=0.3.29=pthreads_h94d23a6_0
-  - libpng=1.6.47=h943b412_0
-  - libsqlite=3.49.1=hee588c1_2
-  - libssh2=1.11.1=hf672d98_0
-  - libstdcxx=14.2.0=h8f9b012_2
-  - libstdcxx-ng=14.2.0=h4852527_2
-  - libtiff=4.7.0=hd9ff511_3
+  - libnsl=2.0.1=hb9d3cd8_1
+  - libopenblas=0.3.30=pthreads_h94d23a6_0
+  - libpng=1.6.50=h943b412_0
+  - libsqlite=3.50.2=hee844dc_2
+  - libssh2=1.11.1=hcf80075_0
+  - libstdcxx=15.1.0=h8f9b012_3
+  - libstdcxx-ng=15.1.0=h4852527_3
+  - libtiff=4.7.0=hf01ce69_5
   - libuuid=2.38.1=h0b41bf4_0
-  - libwebp-base=1.5.0=h851e524_0
+  - libwebp-base=1.6.0=hd42ef1d_0
   - libxcb=1.17.0=h8a09558_0
   - libxcrypt=4.4.36=hd590300_1
   - libzlib=1.3.1=hb9d3cd8_2
@@ -65,40 +69,40 @@ dependencies:
   - ncurses=6.5=h2d0b736_3
   - numpy=1.26.4=py310hb13e2d6_0
   - openjpeg=2.5.3=h5fbd93e_0
-  - openssl=3.4.1=h7b32b05_0
-  - packaging=24.2=pyhd8ed1ab_2
+  - openssl=3.5.1=h7b32b05_0
+  - packaging=25.0=pyh29332c3_1
   - pillow=10.3.0=py310hebfe307_1
-  - pip=25.0.1=pyh8b19718_0
-  - platformdirs=4.3.7=pyh29332c3_0
-  - pluggy=1.5.0=pyhd8ed1ab_1
+  - pip=25.1.1=pyh8b19718_0
+  - platformdirs=4.3.8=pyhe01879c_0
+  - pluggy=1.6.0=pyhd8ed1ab_0
   - pthread-stubs=0.4=hb9d3cd8_1002
-  - pydantic=2.11.2=pyh3cfb1c2_0
-  - pydantic-core=2.33.1=py310hc1293b2_0
-  - pygments=2.19.1=pyhd8ed1ab_0
-  - pylint=3.3.6=pyh29332c3_0
-  - pytest=8.3.5=pyhd8ed1ab_0
-  - pytest-cov=6.1.1=pyhd8ed1ab_0
-  - python=3.10.16=habfa6aa_2_cpython
-  - python_abi=3.10=6_cp310
+  - pydantic=2.11.7=pyh3cfb1c2_0
+  - pydantic-core=2.33.2=py310hbcd0ec0_0
+  - pygments=2.19.2=pyhd8ed1ab_0
+  - pylint=3.3.7=pyhe01879c_0
+  - pytest=8.4.1=pyhd8ed1ab_0
+  - pytest-cov=6.2.1=pyhd8ed1ab_0
+  - python=3.10.18=hd6af730_0_cpython
+  - python_abi=3.10=7_cp310
   - pyyaml=6.0.2=py310h89163eb_2
   - readline=8.2=h8c095d6_2
   - scipy=1.14.1=py310hfcf56fc_2
-  - setuptools=78.1.0=pyhff2d567_0
-  - tk=8.6.13=noxft_h4845f30_101
+  - setuptools=80.9.0=pyhff2d567_0
+  - tk=8.6.13=noxft_hd72426e_102
   - toml=0.10.2=pyhd8ed1ab_1
   - tomli=2.2.1=pyhd8ed1ab_1
-  - tomlkit=0.13.2=pyha770c72_1
-  - typing-extensions=4.13.1=hf5ce1d7_0
-  - typing-inspection=0.4.0=pyhd8ed1ab_0
-  - typing_extensions=4.13.1=pyh29332c3_0
+  - tomlkit=0.13.3=pyha770c72_0
+  - typing-extensions=4.14.1=h4440ef1_0
+  - typing-inspection=0.4.1=pyhd8ed1ab_0
+  - typing_extensions=4.14.1=pyhe01879c_0
   - tzdata=2025b=h78e105d_0
   - wheel=0.45.1=pyhd8ed1ab_1
   - xorg-libxau=1.0.12=hb9d3cd8_0
   - xorg-libxdmcp=1.1.5=hb9d3cd8_0
   - yaml=0.2.5=h7f98852_2
   - zstd=1.5.7=hb8e6e7a_2
   - pip:
-      - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@59dbfbebbcd1cf652e80dda2df29e048ea84509b
+    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a29cd93edd90cc7ad20c227104c58150a69c6c34
 
 variables:
   KMP_WARNINGS: 0

environments/py-3.10-linux-64.conda.lock.yml

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: b71a3789f89cd0f59eb752d8a16a630f5e5bf5a59582226124bbfcca179012b4
+# input_hash: 8f70d81d47096021c15198e0a9db361184aabf56db353452c7852e436c5065f2
 
 channels:
   - conda-forge
@@ -10,73 +10,77 @@ dependencies:
   - _openmp_mutex=4.5=2_gnu
   - annotated-types=0.7.0=pyhd8ed1ab_1
   - bzip2=1.0.8=h4bc722e_7
-  - c-ares=1.34.4=hb9d3cd8_0
-  - ca-certificates=2025.1.31=hbcca054_0
+  - c-ares=1.34.5=hb9d3cd8_0
+  - ca-certificates=2025.7.14=hbd8a1cb_0
   - cached-property=1.5.2=hd8ed1ab_1
   - cached_property=1.5.2=pyha770c72_1
-  - freetype=2.13.3=h48d6fc4_0
-  - h5py=3.13.0=nompi_py310h60e0fe6_100
-  - hdf5=1.14.3=nompi_h2d575fe_109
+  - freetype=2.13.3=ha770c72_1
+  - h5py=3.14.0=nompi_py310hea1e86d_100
+  - hdf5=1.14.6=nompi_h6e4c0c1_102
+  - icu=75.1=he02047a_0
   - keyutils=1.6.1=h166bdaf_0
   - krb5=1.21.3=h659f571_0
   - lcms2=2.17=h717163a_0
-  - ld_impl_linux-64=2.43=h712a8e2_4
-  - lerc=4.0.0=h27087fc_0
-  - libaec=1.1.3=h59595ed_0
-  - libblas=3.9.0=31_h59b9bed_openblas
-  - libcblas=3.9.0=31_he106b2a_openblas
-  - libcurl=8.13.0=h332b0f4_0
-  - libdeflate=1.23=h4ddbbb0_0
+  - ld_impl_linux-64=2.44=h1423503_1
+  - lerc=4.0.0=h0aef613_1
+  - libaec=1.1.4=h3f801dc_0
+  - libblas=3.9.0=32_h59b9bed_openblas
+  - libcblas=3.9.0=32_he106b2a_openblas
+  - libcurl=8.14.1=h332b0f4_0
+  - libdeflate=1.24=h86f0d12_0
   - libedit=3.1.20250104=pl5321h7949ede_0
   - libev=4.33=hd590300_2
+  - libexpat=2.7.0=h5888daf_0
   - libffi=3.4.6=h2dba641_1
-  - libgcc=14.2.0=h767d61c_2
-  - libgcc-ng=14.2.0=h69a702a_2
-  - libgfortran=14.2.0=h69a702a_2
-  - libgfortran5=14.2.0=hf1ad2bd_2
-  - libgomp=14.2.0=h767d61c_2
-  - libjpeg-turbo=3.0.0=hd590300_1
-  - liblapack=3.9.0=31_h7ac8fdf_openblas
-  - liblzma=5.8.1=hb9d3cd8_0
+  - libfreetype=2.13.3=ha770c72_1
+  - libfreetype6=2.13.3=h48d6fc4_1
+  - libgcc=15.1.0=h767d61c_3
+  - libgcc-ng=15.1.0=h69a702a_3
+  - libgfortran=15.1.0=h69a702a_3
+  - libgfortran5=15.1.0=hcea5267_3
+  - libgomp=15.1.0=h767d61c_3
+  - libjpeg-turbo=3.1.0=hb9d3cd8_0
+  - liblapack=3.9.0=32_h7ac8fdf_openblas
+  - liblzma=5.8.1=hb9d3cd8_2
   - libnghttp2=1.64.0=h161d5f1_0
-  - libnsl=2.0.1=hd590300_0
-  - libopenblas=0.3.29=pthreads_h94d23a6_0
-  - libpng=1.6.47=h943b412_0
-  - libsqlite=3.49.1=hee588c1_2
-  - libssh2=1.11.1=hf672d98_0
-  - libstdcxx=14.2.0=h8f9b012_2
-  - libstdcxx-ng=14.2.0=h4852527_2
-  - libtiff=4.7.0=hd9ff511_3
+  - libnsl=2.0.1=hb9d3cd8_1
+  - libopenblas=0.3.30=pthreads_h94d23a6_0
+  - libpng=1.6.50=h943b412_0
+  - libsqlite=3.50.2=hee844dc_2
+  - libssh2=1.11.1=hcf80075_0
+  - libstdcxx=15.1.0=h8f9b012_3
+  - libstdcxx-ng=15.1.0=h4852527_3
+  - libtiff=4.7.0=hf01ce69_5
   - libuuid=2.38.1=h0b41bf4_0
-  - libwebp-base=1.5.0=h851e524_0
+  - libwebp-base=1.6.0=hd42ef1d_0
   - libxcb=1.17.0=h8a09558_0
   - libxcrypt=4.4.36=hd590300_1
   - libzlib=1.3.1=hb9d3cd8_2
   - ncurses=6.5=h2d0b736_3
   - numpy=1.26.4=py310hb13e2d6_0
   - openjpeg=2.5.3=h5fbd93e_0
-  - openssl=3.4.1=h7b32b05_0
+  - openssl=3.5.1=h7b32b05_0
   - pillow=10.3.0=py310hebfe307_1
-  - pip=25.0.1=pyh8b19718_0
+  - pip=25.1.1=pyh8b19718_0
   - pthread-stubs=0.4=hb9d3cd8_1002
-  - pydantic=2.11.2=pyh3cfb1c2_0
-  - pydantic-core=2.33.1=py310hc1293b2_0
-  - python=3.10.16=habfa6aa_2_cpython
-  - python_abi=3.10=6_cp310
+  - pydantic=2.11.7=pyh3cfb1c2_0
+  - pydantic-core=2.33.2=py310hbcd0ec0_0
+  - python=3.10.18=hd6af730_0_cpython
+  - python_abi=3.10=7_cp310
   - readline=8.2=h8c095d6_2
   - scipy=1.14.1=py310hfcf56fc_2
-  - setuptools=78.1.0=pyhff2d567_0
-  - tk=8.6.13=noxft_h4845f30_101
-  - typing-extensions=4.13.1=hf5ce1d7_0
-  - typing-inspection=0.4.0=pyhd8ed1ab_0
-  - typing_extensions=4.13.1=pyh29332c3_0
+  - setuptools=80.9.0=pyhff2d567_0
+  - tk=8.6.13=noxft_hd72426e_102
+  - typing-extensions=4.14.1=h4440ef1_0
+  - typing-inspection=0.4.1=pyhd8ed1ab_0
+  - typing_extensions=4.14.1=pyhe01879c_0
   - tzdata=2025b=h78e105d_0
   - wheel=0.45.1=pyhd8ed1ab_1
   - xorg-libxau=1.0.12=hb9d3cd8_0
   - xorg-libxdmcp=1.1.5=hb9d3cd8_0
   - zstd=1.5.7=hb8e6e7a_2
   - pip:
-      - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@59dbfbebbcd1cf652e80dda2df29e048ea84509b
+    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a29cd93edd90cc7ad20c227104c58150a69c6c34
 
 variables:
   KMP_WARNINGS: 0