Skip to content

Releases: MicrobialDarkMatter/GraphMB

v0.2.5

Choose a tag to compare

@AndreLamurias AndreLamurias released this 18 Jul 13:06
  • Update MLflow version
  • Fix data dir missing from src/graphmb
  • Add option to write bins to fasta files (--writebins)

v0.2.4

Choose a tag to compare

@AndreLamurias AndreLamurias released this 05 Apr 11:04

Upgrade packages

v0.2.2

Choose a tag to compare

@AndreLamurias AndreLamurias released this 02 Feb 14:34
version bump

v0.2.0

Choose a tag to compare

@AndreLamurias AndreLamurias released this 01 Feb 15:58
  • Changelog

Added

  • VAE, GCN, SAGE and GAT models based on tensorflow (VAEG code)
  • SCG-based loss to train VAE and GNNs
  • Output assembly stats while starting
  • Eliminate VAMB and DGL dependencies
  • PyPI installation

Changed

  • Code structure changed to load data outside of DGL and use DGL only for the GraphSAGE-LSTM model
  • Log dataloading steps
  • Write cache to numpy files

Fixed

  • Feature files are written to specific directies (fixes #17)

v0.1.5

Choose a tag to compare

@AndreLamurias AndreLamurias released this 13 Jul 11:52

Use contig graph

v0.1.4

Choose a tag to compare

@AndreLamurias AndreLamurias released this 12 Apr 08:16
v0.1.4 Fixes #7

v0.1.3

Choose a tag to compare

@AndreLamurias AndreLamurias released this 25 Feb 14:37
delete files

v0.1.2

Choose a tag to compare

@AndreLamurias AndreLamurias released this 14 Dec 08:24
Entrypoint setup