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calculate_SNB.py v0.2

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@bastiaanvonmeijenfeldt bastiaanvonmeijenfeldt released this 13 Apr 15:44
b7ae19a
  • Input files can now be relative abundance tables. Note that if a relative abundance table is supplied, the --c2 / --pairwise_comparission_cutoff cannot be set to absolute read counts, as was done in the paper (with 5 reads).
  • Both --c1 / --presence_cutoff and --c2 / --pairwise_comparisson_cutoff can now be set to 0 to consider all taxonomic lineages with a non-zero abundance.