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CAT pack v5.3

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@bastiaanvonmeijenfeldt bastiaanvonmeijenfeldt released this 05 Nov 23:33
· 76 commits to master since this release
v5.3
1dc53b0
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Learn about vigilant mode.

Notable changes

  • GTDB support.
  • Sequence databases (NCBI nr or GTDB) can be downloaded with CAT download, and CAT databases constructed with CAT prepare.
  • Sensible defaults of DIAMOND parameters for high memory machines: --top 11 --block_size 12 --index_chunks 1.
  • You can now run CAT first, and then run BAT with the predicted proteins fasta and alignment file generated by CAT.
  • Preparations for Read Annotation Tool (RAT).
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