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replace pd df append wth pd.concat #10

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2411658
replace pd df append wth pd.concat
asaravia-butler Aug 1, 2024
3a4600e
Replace url with forked url
asaravia-butler Aug 1, 2024
a649aff
Replace url with forked url
asaravia-butler Aug 1, 2024
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4 changes: 2 additions & 2 deletions meta.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@ package:

source:
git_rev: v0.0.1
git_url: https://github.com/LucasESBS/scoreCT
git_url: https://github.com/asaravia-butler/scoreCT

requirements:
host:
Expand All @@ -21,7 +21,7 @@ requirements:
- seaborn

about:
home: https://github.com/LucasESBS/scoreCT
home: https://github.com/asaravia-butler/scoreCT
license: MIT
license_familY: MIT
license_file: LICENSE.md
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4 changes: 3 additions & 1 deletion scorect/scorect_api.py
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Expand Up @@ -115,13 +115,15 @@ def wrangle_ranks_from_anndata(anndata, cluster_key='louvain'):
top_gene = pd.DataFrame(anndata.uns['rank_genes_groups']['names']).loc[:nb_marker]
marker_df = pd.DataFrame()
# Order values
concat_list = []
for i in top_score.columns:
concat = pd.concat([top_score[[str(i)]], top_adjpval[str(i)], top_gene[[str(i)]]], axis=1, ignore_index=True)
concat['cluster_number'] = i
col = list(concat.columns)
col[0], col[1], col[-2] = 'z_score', 'adj_pvals', 'gene'
concat.columns = col
marker_df = marker_df.append(concat)
concat_list.append(concat)
marker_df = pd.concat(concat_list, ignore_index=True)
return marker_df


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2 changes: 1 addition & 1 deletion setup.py
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Expand Up @@ -12,7 +12,7 @@
description="scoreCT: Automated cell type annotation in scRNA-seq data",
long_description=long_description,
long_description_content_type="text/markdown",
url="https://github.com/LucasESBS/scoreCT",
url="https://github.com/asaravia-butler/scoreCT",
packages=setuptools.find_packages(),
classifiers=(
"Programming Language :: Python :: 3",
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