slurm profile trial

LiaOb21 · Dec 22, 2023 · 578d9ad · 578d9ad
1 parent 9e3975c
commit 578d9ad
Showing 1 changed file with 14 additions and 0 deletions.
diff --git a/profile/config.v8+.yaml b/profile/config.v8+.yaml
@@ -0,0 +1,14 @@
+cluster:
+  mkdir -p logs/{rule} &&
+  sbatch
+    --partition={resources.partition}
+    --qos={resources.qos}
+    --cpus-per-task={threads}
+    --mem={resources.mem_mb}
+    --job-name=smk-{rule}-{wildcards}
+    --output=logs/{rule}/{rule}-{wildcards}-%j.out
+default-resources:
+  - partition=standard
+  - qos=normal
+  - mem=200G
+  - time=3-00:00:00