Added perslay.

.github/workflows/R-CMD-check.yaml

@@ -53,17 +53,19 @@ jobs:
       - name: setup r-reticulate venv
         shell: Rscript {0}
         run: |
-
           path_to_python <- reticulate::virtualenv_create(
             envname = "r-reticulate",
             python = Sys.which("python"), # placed on PATH by the setup-python action
             packages = c(
               "POT==0.9.1", "scikit-learn==1.3.1", "gudhi==3.8.0"
             )
           )
-
           writeLines(sprintf("RETICULATE_PYTHON=%s", path_to_python),
                      Sys.getenv("GITHUB_ENV"))
+          install.packages("tensorflow")
+          tensorflow::install_tensorflow(
+            envname = "r-reticulate", version = "2.14-cpu"
+          )
 
       - uses: r-lib/actions/check-r-package@v2
         with:

.github/workflows/pkgdown.yaml

@@ -30,9 +30,34 @@ jobs:
         with:
           use-public-rspm: true
 
+      - name: Install reticulate
+        shell: Rscript {0}
+        run: |
+          install.packages("reticulate")
+
+      - uses: actions/setup-python@v4
+        with:
+          python-version: "3.9"
+
+      - name: setup r-reticulate venv
+        shell: Rscript {0}
+        run: |
+          path_to_python <- reticulate::virtualenv_create(
+            envname = "r-reticulate",
+            python = Sys.which("python"), # placed on PATH by the setup-python action
+            packages = c(
+              "POT==0.9.1", "scikit-learn==1.3.1",
+              "tensorflow==2.14.0", "gudhi==3.8.0"
+            )
+          )
+          writeLines(sprintf("RETICULATE_PYTHON=%s", path_to_python),
+                     Sys.getenv("GITHUB_ENV"))
+
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          extra-packages: any::pkgdown, local::.
+          extra-packages: |
+            any::pkgdown
+            local::.
           needs: website
 
       - name: Build site
@@ -41,7 +66,7 @@ jobs:
 
       - name: Deploy to GitHub pages 🚀
         if: github.event_name != 'pull_request'
-        uses: JamesIves/[email protected].1
+        uses: JamesIves/[email protected].3
         with:
           clean: false
           branch: gh-pages

.github/workflows/test-coverage.yaml

@@ -28,20 +28,19 @@ jobs:
 
       - uses: actions/setup-python@v4
         with:
-          python-version: "3.x"
+          python-version: "3.9"
 
       - name: setup r-reticulate venv
         shell: Rscript {0}
         run: |
-
           path_to_python <- reticulate::virtualenv_create(
             envname = "r-reticulate",
             python = Sys.which("python"), # placed on PATH by the setup-python action
             packages = c(
-              "POT==0.9.1", "scikit-learn==1.3.1", "gudhi==3.8.0"
+              "POT==0.9.1", "scikit-learn==1.3.1",
+              "tensorflow==2.14.0", "gudhi==3.8.0"
             )
           )
-
           writeLines(sprintf("RETICULATE_PYTHON=%s", path_to_python),
                      Sys.getenv("GITHUB_ENV"))
 

DESCRIPTION

@@ -30,6 +30,7 @@ Config/reticulate:
     packages = list(
       list(package = "POT", version = "0.9.1"),
       list(package = "scikit-learn", version = "1.3.1"), 
+      list(package = "tensorflow", version = "2.14.0"),
       list(package = "gudhi", version = "3.8.0")
     )
   )

NAMESPACE

@@ -19,6 +19,10 @@ export(DiagramScaler)
 export(DiagramSelector)
 export(Entropy)
 export(FeatureAgglomeration)
+export(FlatPerslayPhi)
+export(GaussianMixturePerslayWeight)
+export(GaussianPerslayPhi)
+export(GridPerslayWeight)
 export(KMeans)
 export(Landscape)
 export(MaxAbsScaler)
@@ -34,6 +38,8 @@ export(PersistenceImage)
 export(PersistenceScaleSpaceKernel)
 export(PersistenceSlicedWassersteinKernel)
 export(PersistenceWeightedGaussianKernel)
+export(Perslay)
+export(PowerPerslayWeight)
 export(ProminentPoints)
 export(RipsComplex)
 export(RobustScaler)
@@ -46,6 +52,7 @@ export(SpectralCoclustering)
 export(StandardScaler)
 export(StrongWitnessComplex)
 export(TangentialComplex)
+export(TentPerslayPhi)
 export(Tomato)
 export(TopologicalVector)
 export(WassersteinDistance)
@@ -59,6 +66,8 @@ export(is_persistence_diagram)
 export(is_persistence_diagram_sample)
 export(seq_circle)
 export(sphere)
+export(tf)
+export(to_ragged_tensor)
 export(torus)
 importFrom(R6,R6Class)
 importFrom(Rdpack,reprompt)