cuEDM

GPU-accelerated implementation of Empirical Dynamic Modeling

Requirements

• CMake 3.10+
• C++ compiler that supports C++11 (Intel C++ Compiler is strongly recommended for building the CPU backend)
• HDF5
• ArrayFire 3.6.2+ for building the GPU backend

Installation

1. Install dependencies:

   • Install HDF5.
   • Install ArrayFire if building the GPU backend.

2. Clone the source code:

   $ git clone --recursive git@github.com:keichi/cuEDM.git
   

3. Run cmake:

   $ cd cuEDM
   $ mkdir build
   $ cd build
   $ cmake -DCMAKE_BUILD_TYPE=Release ..
   
   • -DCMAKE_BUILD_TYPE can be either Release, RelWithDebInfo, Debug or MinSizeRel.
   • Add -DCMAKE_CXX_COMPILER=/path/to/c++ to select the C++ compiler to use.
   • Add -DCMAKE_CXX_FLAGS="..." to customize the C++ compiler flags.
   • Add -DHDF5_DIR=/path/to/hdf5 if HDF5 is not installed in a standard path.
   • Add -DArrayFire_DIR=/path/to/arrayfire if ArrayFire is not installed in a standard path.

4. Run make:

   $ make