This is a directory to work with IRIDA submission
- This is still under development
- Replace the project id with your own
- Replace the path
- Remember to install writexl package
- Tested on our labs files and these are gzipped. Edit the code to suit your user case
- Rscript |path of the script| |path of the directory containing the fastq files| |project id provided by the irida workbench|