Models hub internal (#1689)

* 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1232)

* Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en

* Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md

---------

Co-authored-by: ahmet-mesut <[email protected]>
Co-authored-by: bugra <[email protected]>

* 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1229)

* Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en

* Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md

---------

Co-authored-by: gokhanturer <[email protected]>
Co-authored-by: bugra <[email protected]>

* 2024-05-21-ner_deid_context_nameAugmented_pipeline_en (#1233)

* Add model 2024-05-21-ner_deid_context_nameAugmented_pipeline_en

* Update 2024-05-21-ner_deid_context_nameAugmented_pipeline_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: bugra <[email protected]>

* 2024-05-22-explain_clinical_doc_public_health_en (#1239)

* Add model 2024-05-22-explain_clinical_doc_public_health_en

* Update 2024-05-22-explain_clinical_doc_public_health_en.md

---------

Co-authored-by: ahmet-mesut <[email protected]>
Co-authored-by: Gökhan <[email protected]>

* 2024-05-22-explain_clinical_doc_public_health_en (#1240)

* Add model 2024-05-22-explain_clinical_doc_public_health_en

* Update 2024-05-22-explain_clinical_doc_public_health_en.md

Fixed python code block review

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Gökhan <[email protected]>

* 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en (#1241)

* Add model 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en

* Update 2024-05-23-mpnet_embeddings_medical_assertion_i2b2_en.md

* Add model 2024-05-23-mpnet_embeddings_medical_assertion_jsl_en

* Add model 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en

* Update 2024-05-23-mpnet_embeddings_medical_assertion_oncology_en.md

* Add model 2024-05-23-mpnet_embeddings_medical_assertion_sdoh_en

---------

Co-authored-by: Cabir40 <[email protected]>
Co-authored-by: Cabir C <[email protected]>

* 2024-05-29-clinical_deidentification_en (#1248)

* Update 2024-05-29-clinical_deidentification_en.md

* Update 2024-05-29-clinical_deidentification_en.md

* 2024-05-30-clinical_deidentification_en (#1251)

* 2024-05-30-clinical_deidentification_en (#1250)

* Update 2024-05-30-clinical_deidentification_en.md

* Update 2024-05-29-clinical_deidentification_en.md

* Update 2024-05-30-clinical_deidentification_en.md

* 2024-05-31-clinical_deidentification_multi_mode_output_en (#1254)

* 2024-05-31-clinical_deidentification_multi_mode_output_en (#1255)

* 2024-05-31-clinical_deidentification_multi_mode_output_en (#1256)

* 2024-06-07-classifierml_ade_en (#1258)

* Add model 2024-06-07-classifierml_ade_en

* Update 2024-06-07-classifierml_ade_en.md

---------

Co-authored-by: bugeki <[email protected]>
Co-authored-by: bugra <[email protected]>

* 2024-06-07-ner_vop_v2_en (#1262)

* Add model 2024-06-07-ner_profiling_vop_en (#1261)

* 2024-06-03-ner_profiling_vop_en (#1257)

* 2024-06-10-sbiobertresolve_snomed_veterinary_en (#1266)

* Add model 2024-06-10-sbiobertresolve_snomed_veterinary_en

* Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md

fixed python code block review

* Update 2024-06-10-sbiobertresolve_snomed_veterinary_en.md

---------

Co-authored-by: gokhanturer <[email protected]>
Co-authored-by: Gökhan <[email protected]>
Co-authored-by: muhammetsnts <[email protected]>

* 2024-06-10-assertion_dl_radiology_en (#1265)

* 2024-06-10-ner_oncology_wip_en (#1264)

* Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1268)

Co-authored-by: kolia1985 <[email protected]>

* Add model 2024-06-12-pdf_deid_subentity_context_augmented_pipeline_en (#1269)

Co-authored-by: kolia1985 <[email protected]>

* 2024-06-12-sbiobertresolve_umls_findings_en (#1270)

* 2024-06-18-sbiobertresolve_rxnorm_augmented_en (#1275)

* 2024-06-20-rxnorm_mapper_en (#1280)

* 2024-06-19-explain_clinical_doc_medication_en (#1279)

* Add model 2024-06-19-explain_clinical_doc_medication_en

* Add model 2024-06-19-explain_clinical_doc_medication_en

* Update 2024-06-19-explain_clinical_doc_medication_en.md

* Add model 2024-06-21-rxnorm_resolver_pipeline_en

* Update 2024-06-21-rxnorm_resolver_pipeline_en.md

* Update 2024-06-21-rxnorm_resolver_pipeline_en.md

* Update 2024-06-21-rxnorm_resolver_pipeline_en.md

* Update 2024-06-19-explain_clinical_doc_medication_en.md

* Update 2024-06-19-explain_clinical_doc_medication_en.md

* Add model 2024-06-24-medication_resolver_transform_pipeline_en

* Add model 2024-06-24-medication_resolver_pipeline_en

* Update 2024-06-21-rxnorm_resolver_pipeline_en.md

---------

Co-authored-by: bugeki <[email protected]>
Co-authored-by: bugra <[email protected]>

* 2024-06-19-country_matcher_en (#1277)

* Add model 2024-06-19-country_matcher_en

* Update 2024-06-19-country_matcher_en.md

* Update 2024-06-19-country_matcher_en.md

* Add model 2024-06-19-phone_matcher_en

* Update 2024-06-19-phone_matcher_en.md

* Update 2024-06-19-phone_matcher_en.md

* Add model 2024-06-19-zip_matcher_en

* Update 2024-06-19-zip_matcher_en.md

* Add model 2024-06-19-email_matcher_en

* Update 2024-06-19-email_matcher_en.md

* Update 2024-06-19-country_matcher_en.md

* Update 2024-06-19-email_matcher_en.md

* Update 2024-06-19-phone_matcher_en.md

* Update 2024-06-19-zip_matcher_en.md

* Add model 2024-06-19-state_matcher_en

* Update 2024-06-19-state_matcher_en.md

* Add model 2024-06-19-explain_clinical_doc_medication_en

* Update 2024-06-19-explain_clinical_doc_medication_en.md

* Add model 2024-06-24-rxnorm_resolver_pipeline_en

* Update 2024-06-24-rxnorm_resolver_pipeline_en.md

* Update 2024-06-19-explain_clinical_doc_medication_en.md

* Update 2024-06-24-rxnorm_resolver_pipeline_en.md

* Add model 2024-06-24-medication_resolver_transform_pipeline_en

* Update 2024-06-19-phone_matcher_en.md

* Update 2024-06-24-medication_resolver_transform_pipeline_en.md

* Add model 2024-06-24-medication_resolver_pipeline_en

* Update 2024-06-24-medication_resolver_pipeline_en.md

---------

Co-authored-by: Meryem1425 <[email protected]>
Co-authored-by: Vildan <[email protected]>
Co-authored-by: Cabir C <[email protected]>
Co-authored-by: bugra <[email protected]>

* 2024-06-17-ner_profiling_sdoh_en (#1274)

* Add model 2024-06-17-ner_profiling_sdoh_en

* Add model 2024-06-18-ner_profiling_oncology_en

* Add model 2024-06-19-explain_clinical_doc_medication_en

* Update 2024-06-19-explain_clinical_doc_medication_en.md

* Update 2024-06-19-explain_clinical_doc_medication_en.md

* Update 2024-06-19-explain_clinical_doc_medication_en.md

* Add model 2024-06-24-rxnorm_resolver_pipeline_en

* Update 2024-06-24-rxnorm_resolver_pipeline_en.md

* Add model 2024-06-24-medication_resolver_transform_pipeline_en

* Add model 2024-06-24-medication_resolver_pipeline_en

* Update 2024-06-24-medication_resolver_transform_pipeline_en.md

* Update 2024-06-24-medication_resolver_pipeline_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: bugra <[email protected]>

* 2024-06-25-explain_clinical_doc_radiology_en (#1288)

* Add model 2024-06-25-explain_clinical_doc_radiology_en

* Update 2024-06-25-explain_clinical_doc_radiology_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: bugra <[email protected]>

* 2024-06-25-explain_clinical_doc_radiology_en (#1287)

* Add model 2024-06-25-explain_clinical_doc_radiology_en

* Update 2024-06-25-explain_clinical_doc_radiology_en.md

---------

Co-authored-by: Meryem1425 <[email protected]>
Co-authored-by: bugra <[email protected]>

* 2024-06-25-explain_clinical_doc_radiology_en (#1286)

* Add model 2024-06-25-explain_clinical_doc_radiology_en

* Update 2024-06-25-explain_clinical_doc_radiology_en.md

---------

Co-authored-by: bugeki <[email protected]>
Co-authored-by: bugra <[email protected]>

* Update 2024-06-24-medication_resolver_transform_pipeline_en.md

* Update 2024-06-24-medication_resolver_transform_pipeline_en.md

* Update 2024-06-24-medication_resolver_transform_pipeline_en.md

* 2024-06-17-cancer_diagnosis_matcher_en (#1272)

* 2024-06-28-explain_clinical_doc_granular_en (#1292)

* 2024-06-28-explain_clinical_doc_granular_en (#1295)

* 2024-06-28-explain_clinical_doc_granular_en (#1294)

* Add model 2024-06-28-explain_clinical_doc_granular_en

* Update 2024-06-28-explain_clinical_doc_granular_en.md

* Add model 2024-07-01-ner_alcohol_smoking_en

* Update 2024-07-01-ner_alcohol_smoking_en.md

* Add model 2024-07-01-genericclassifier_alcohol_mpnet_wip_en

* Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md

* Add model 2024-07-01-genericclassifier_smoking_mpnet_wip_en

* Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md

* Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md

* Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md

* Update 2024-07-01-genericclassifier_alcohol_mpnet_wip_en.md

* Update 2024-07-01-genericclassifier_smoking_mpnet_wip_en.md

* Update 2024-07-01-ner_alcohol_smoking_en.md

* Add model 2024-07-02-biolordresolve_rxnorm_augmented_en

* Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: bugra <[email protected]>
Co-authored-by: Akar <[email protected]>

* Update 2024-07-02-biolordresolve_rxnorm_augmented_en.md

* 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en (#1303)

* Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en

* Add model 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en

* Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md

* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_oncology_en.md

* Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md

---------

Co-authored-by: Cabir40 <[email protected]>
Co-authored-by: Cabir C <[email protected]>

* Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md

* Update 2024-07-03-fewhot_assertion_oncology_e5_base_v2_oncology_en.md

* 2024-07-03-ner_menopause_core_en (#1304)

* 2024-07-02-city_matcher_en (#1296)

* 2024-07-03-re_oncology_biomarker_result_en (#1302)

* 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en (#1301)

* Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en

* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md

* Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en

* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md

* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md

* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md

* Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en

* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

* Delete docs/_posts/akrztrk/2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

* Add model 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en

* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_base_en.md

* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_i2b2_en.md

* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

* Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en

* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_smoking_en.md

* Add model 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en

* Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md

* Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md

* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

* Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md

* Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en

* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_jsl_en.md

* Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md

* Add model 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en

* Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md

* Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md

* Update 2024-07-03-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

* Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md

* Add model 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en

* Update 2024-07-03-e5_base_v2_embeddings_medical_assertion_radiology_en.md

* Update 2024-07-03-fewhot_assertion_smoking_e5_base_v2_smoking_en.md

* Update 2024-07-03-fewhot_assertion_jsl_e5_base_v2_jsl_en.md

* Add model 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en

* Update 2024-07-03-fewhot_assertion_radiology_e5_base_v2_radiology_en.md

* Add model 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en

* Update 2024-07-04-e5_base_v2_embeddings_medical_assertion_sdoh_en.md

* Add model 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en

* Update 2024-07-04-fewhot_assertion_sdoh_e5_base_v2_sdoh_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-06-26-contextual_assertion_someone_else_en (#1298)

* Add model 2024-06-26-contextual_assertion_someone_else_en

* Add model 2024-07-03-contextual_assertion_absent_en

* Add model 2024-07-04-contextual_assertion_past_en

* updated model table.

* updated model table-2

* updated example text

---------

Co-authored-by: yigitgull <[email protected]>
Co-authored-by: yigitgull <[email protected]>

* 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1327)

* Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en

* Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

* Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

* Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en (#1328)

* Add model 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en

* Update 2024-07-13-fewhot_assertion_i2b2_e5_base_v2_i2b2_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-07-22-ner_profiling_clinical_en (#1335)

* 2024-07-22-ner_profiling_clinical_en (#1337)

* 2024-07-22-ner_profiling_clinical_en (#1336)

* Add model 2024-07-27-mpnetresolve_icd10_cms_hcc_2024_midyear_en (#1343)

* 2024-07-25-mpnet_embeddings_medical_assertion_en (#1341)

* 2024-08-02-bert_sequence_classifier_metastasis_en (#1356)

* Add model 2024-08-02-bert_sequence_classifier_metastasis_en

* Update 2024-08-02-bert_sequence_classifier_metastasis_en.md

* Update 2024-08-02-bert_sequence_classifier_metastasis_en.md

* Update 2024-08-02-bert_sequence_classifier_metastasis_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-08-09-classifierdl_metastasis_en (#1371)

* Update 2024-08-09-generic_svm_classifier_metastasis_en.md

* Update 2024-08-09-generic_svm_classifier_metastasis_en.md

* Update 2024-08-09-generic_logreg_classifier_metastasis_en.md

* Update 2024-08-09-generic_logreg_classifier_metastasis_en.md

* Update 2024-08-09-generic_classifier_metastasis_en.md

* Update 2024-08-09-classifierdl_metastasis_en.md

* Update 2024-08-09-classifierdl_metastasis_en.md

* Update 2024-08-09-generic_classifier_metastasis_en.md

* Update 2024-08-09-classifierdl_metastasis_en.md

* Update 2024-08-09-generic_logreg_classifier_metastasis_en.md

* Update 2024-08-09-generic_svm_classifier_metastasis_en.md

* Update 2024-08-09-generic_classifier_metastasis_en.md

* 2024-08-12-large_fewshot_classifier_ade_en (#1372)

* Add model 2024-08-12-large_fewshot_classifier_ade_en

* Update 2024-08-12-large_fewshot_classifier_ade_en.md

Fixed Benchmarking Section

* Update 2024-08-12-large_fewshot_classifier_ade_en.md

Updated the view

* Update 2024-08-12-large_fewshot_classifier_ade_en.md

---------

Co-authored-by: gokhanturer <[email protected]>
Co-authored-by: Gökhan <[email protected]>
Co-authored-by: Cabir C. <[email protected]>

* 2024-08-13-generic_classifier_oncology_en (#1374)

* 2024-08-16-ner_cancer_types_wip_en (#1390)

* Update 2024-08-16-ner_cancer_types_wip_en.md

* Update 2024-08-16-ner_cancer_types_wip_en.md

* 2024-08-14-sbiobertresolve_rxnorm_augmented_v2_en (#1384)

* 2024-08-20-biolordresolve_avg_rxnorm_augmented_v2_en (#1397)

* 2024-08-19-sbiobertresolve_icd10cm_augmented_en (#1396)

* Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_en

* Add model 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en

* Add model 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en

* Add model 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en

* Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md

typo fixed

* Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md

* Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md

typo fixed

* Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md

typo fixed

* Update 2024-08-19-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md

* Update 2024-08-19-sbiobertresolve_icd10cm_augmented_en.md

* Update 2024-08-19-sbiobertresolve_icd10cm_slim_billable_hcc_en.md

* Update 2024-08-19-sbiobertresolve_icd10cm_slim_normalized_en.md

---------

Co-authored-by: Ahmetemintek <[email protected]>
Co-authored-by: muhammetsnts <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-08-15-url_matcher_en (#1387)

* Add model 2024-08-15-url_matcher_en

* Update 2024-08-15-url_matcher_en.md

* Add model 2024-08-15-email_matcher_en

* Add model 2024-08-19-ip_matcher_en

---------

Co-authored-by: yigitgull <[email protected]>
Co-authored-by: Yigit <[email protected]>

* 2024-08-20-ner_stigmatization_wip_en (#1398)

* 2024-08-21-url_matcher_en (#1400)

* Add model 2024-08-21-url_matcher_en

* Add model 2024-08-21-ip_matcher_en

* Add model 2024-08-21-email_matcher_en

---------

Co-authored-by: yigitgull <[email protected]>

* Revert "2024-08-15-url_matcher_en (#1387)" (#1401)

This reverts commit 7e81a6e7bf3686a8ab03db4bae47c1b15c046a4f.

* 2024-08-15-large_fewshot_classifier_age_group_en (#1388)

* Add model 2024-08-15-large_fewshot_classifier_age_group_en

* Update 2024-08-15-large_fewshot_classifier_age_group_en.md

Fixed python code block view

* Update 2024-08-15-large_fewshot_classifier_age_group_en.md

Fixed the code snippet

---------

Co-authored-by: gokhanturer <[email protected]>
Co-authored-by: Gökhan <[email protected]>

* 2024-08-21-sbiobertresolve_icd10cm_slim_billable_hcc_en (#1404)

* 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en (#1410)

* Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en

* Add model 2024-08-22-rxnorm_resolver_pipeline_en

* Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md

* Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md

* Add model 2024-08-22-medication_resolver_pipeline_en

* Update 2024-08-22-medication_resolver_pipeline_en.md

* Update 2024-08-22-rxnorm_resolver_pipeline_en.md

* Add model 2024-08-22-icd10cm_resolver_pipeline_en

* Update 2024-08-22-icd10cm_resolver_pipeline_en.md

* Add model 2024-08-22-medication_resolver_transform_pipeline_en

* Update 2024-08-22-medication_resolver_transform_pipeline_en.md

* Update 2024-08-22-rxnorm_resolver_pipeline_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: bugra <[email protected]>
Co-authored-by: muhammetsnts <[email protected]>

* 2024-08-22-rxnorm_resolver_pipeline_en (#1411)

* Add model 2024-08-22-rxnorm_resolver_pipeline_en

* Add model 2024-08-22-medication_resolver_transform_pipeline_en

* Add model 2024-08-22-icd10cm_resolver_pipeline_en

* Add model 2024-08-22-medication_resolver_pipeline_en

* Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en

* Update 2024-08-22-icd10cm_resolver_pipeline_en.md

* Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md

* Update 2024-08-22-medication_resolver_pipeline_en.md

* Update 2024-08-22-medication_resolver_transform_pipeline_en.md

* Update 2024-08-22-rxnorm_resolver_pipeline_en.md

* Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en

---------

Co-authored-by: Meryem1425 <[email protected]>
Co-authored-by: bugra <[email protected]>

* 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en (#1409)

* Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en

* Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md

* Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md

* Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md

* Update 2024-08-22-sbiobertresolve_icd10cm_augmented_billable_hcc_en.md

* Add model 2024-08-22-sbiobertresolve_icd10cm_augmented_en

* Update 2024-08-22-sbiobertresolve_icd10cm_augmented_en.md

* Add model 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en

* Update 2024-08-22-sbiobertresolve_icd10cm_slim_normalized_en.md

* Add model 2024-08-22-icd10cm_resolver_pipeline_en

* Update 2024-08-22-icd10cm_resolver_pipeline_en.md

* Add model 2024-08-22-medication_resolver_transform_pipeline_en

* Add model 2024-08-22-rxnorm_resolver_pipeline_en

* Add model 2024-08-22-medication_resolver_pipeline_en

* Update 2024-08-22-medication_resolver_pipeline_en.md

* Update 2024-08-22-medication_resolver_transform_pipeline_en.md

* Update 2024-08-22-rxnorm_resolver_pipeline_en.md

* Add model 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en

* Update 2024-08-22-icd10cm_rxnorm_resolver_pipeline_en.md

---------

Co-authored-by: bugeki <[email protected]>
Co-authored-by: bugra <[email protected]>

* 2024-08-27-ner_stigmatization_wip_en (#1419)

* Add model 2024-08-27-ner_stigmatization_wip_en

* Update 2024-08-27-ner_stigmatization_wip_en.md

* Update 2024-08-27-ner_stigmatization_wip_en.md

* Update 2024-08-27-ner_stigmatization_wip_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>

* Add model 2024-08-27-dicom_died_pipeline_en (#1424)

Co-authored-by: kolia1985 <[email protected]>

* 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en (#1437)

* Add model 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en

* Update 2024-09-05-bert_sequence_classifier_ade_augmented_v2_en.md

* Add model 2024-09-05-ner_ade_clinical_v2_en

* Update 2024-09-05-ner_ade_clinical_v2_en.md

---------

Co-authored-by: Meryem1425 <[email protected]>
Co-authored-by: Vildan <[email protected]>

* 2024-08-29-biolord_icd10cm_augmented_billable_hcc_en (#1429)

* Update 2024-09-02-sbiobertresolve_meddra_lowest_level_term_en.md

* Update 2024-09-02-sbiobertresolve_meddra_preferred_term_en.md

* Update 2024-09-03-meddra_llt_pt_mapper_en.md

* Update 2024-09-03-meddra_pt_llt_mapper_en.md

* Update 2024-09-04-icd10_meddra_llt_mapper_en.md

* Update 2024-09-04-icd10_meddra_pt_mapper_en.md

* Update 2024-09-04-meddra_llt_icd10_mapper_en.md

* Update 2024-09-04-meddra_pt_icd10_mapper_en.md

* Update 2024-09-05-meddra_hlt_pt_mapper_en.md

* Update 2024-09-05-meddra_llt_snomed_mapper_en.md

* Update 2024-09-05-meddra_pt_hlt_mapper_en.md

* Update 2024-09-05-snomed_meddra_llt_mapper_en.md

* 2024-09-06-meddra_pt_resolver_pipeline_en (#1439)

* Update 2024-09-06-meddra_pt_resolver_pipeline_en.md

* Update 2024-09-06-meddra_llt_resolver_pipeline_en.md

* 2024-09-06-ner_deid_generic_docwise_en (#1440)

* 2024-09-09-country_matcher_en (#1443)

* Add model 2024-09-09-country_matcher_en

* Update 2024-09-09-country_matcher_en.md

Fixed python code block view

* Add model 2024-09-09-zip_parser_en

* Update 2024-09-09-zip_parser_en.md

Fixed python code block view

* Add model 2024-09-09-state_matcher_en

* Update 2024-09-09-state_matcher_en.md

Fixed python code block view

---------

Co-authored-by: gokhanturer <[email protected]>
Co-authored-by: Gökhan <[email protected]>

* 2024-09-09-explain_clinical_doc_vop_small_en (#1446)

* 2024-09-09-explain_clinical_doc_cancer_type_en (#1444)

* 2024-09-09-explain_clinical_doc_cancer_type_en (#1447)

* Update 2024-09-09-explain_clinical_doc_vop_small_en.md

* Update 2024-09-09-explain_clinical_doc_vop_small_en.md

* Update 2024-09-09-explain_clinical_doc_vop_small_en.md

* Update 2024-09-09-explain_clinical_doc_vop_small_en.md

* Update 2024-09-09-explain_clinical_doc_vop_small_en.md

* Update 2024-09-09-explain_clinical_doc_vop_small_en.md

* 2024-09-11-state_matcher_en (#1458)

* Add model 2024-09-11-state_matcher_en

* Update 2024-09-11-state_matcher_en.md

FİXED CODE BLOCK VİEW

---------

Co-authored-by: gokhanturer <[email protected]>
Co-authored-by: Gökhan <[email protected]>

* 2024-09-11-explain_clinical_doc_oncology_en (#1461)

* 2024-09-11-explain_clinical_doc_oncology_en (#1462)

* 2024-09-11-explain_clinical_doc_oncology_en (#1463)

* 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en (#1464)

* Add model 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en

* Update 2024-09-11-sentence_detector_dl_healthcare_v2_wip_en.md

---------

Co-authored-by: Cabir40 <[email protected]>
Co-authored-by: Cabir C. <[email protected]>

* 2024-09-12-sbiobertresolve_ndc_en (#1466)

* Add model 2024-09-12-sbiobertresolve_ndc_en

* Update 2024-09-12-sbiobertresolve_ndc_en.md

typo fixed

---------

Co-authored-by: Ahmetemintek <[email protected]>
Co-authored-by: muhammetsnts <[email protected]>

* 2024-09-12-biolordresolve_icd10cm_augmented_billable_hcc_en (#1468)

* removed md cart

* 2024-09-13-ndc_resolver_pipeline_en (#1473)

* Add model 2024-09-13-ndc_resolver_pipeline_en

* Update 2024-09-13-ndc_resolver_pipeline_en.md

---------

Co-authored-by: gpirge <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-09-13-ndc_resolver_pipeline_en (#1470)

* Add model 2024-09-13-ndc_resolver_pipeline_en

* Update 2024-09-13-ndc_resolver_pipeline_en.md

---------

Co-authored-by: Meryem1425 <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-09-13-ndc_resolver_pipeline_en (#1469)

* Add model 2024-09-13-ndc_resolver_pipeline_en

* Update 2024-09-13-ndc_resolver_pipeline_en.md

* Update 2024-09-13-ndc_resolver_pipeline_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-09-16-oncology_biomarker_pipeline_en (#1478)

* Add model 2024-09-16-oncology_biomarker_pipeline_en

* Update 2024-09-16-oncology_biomarker_pipeline_en.md

* Add model 2024-09-16-explain_clinical_doc_cancer_type_en

* Update 2024-09-16-explain_clinical_doc_cancer_type_en.md

* Add model 2024-09-09-explain_clinical_doc_cancer_type_en

* Delete docs/_posts/Meryem1425/2024-09-09-explain_clinical_doc_cancer_type_en.md

This PP is the previous version of the cancer_type PP

* Delete docs/_posts/Meryem1425/2024-09-16-oncology_biomarker_pipeline_en.md

---------

Co-authored-by: Meryem1425 <[email protected]>
Co-authored-by: Vildan <[email protected]>
Co-authored-by: muhammetsnts <[email protected]>

* 2024-09-16-oncology_biomarker_pipeline_en (#1479)

* Add model 2024-09-16-oncology_biomarker_pipeline_en

* Update 2024-09-16-oncology_biomarker_pipeline_en.md

* Add model 2024-09-16-explain_clinical_doc_cancer_type_en

* Update 2024-09-16-explain_clinical_doc_cancer_type_en.md

* Delete docs/_posts/bugeki/2024-09-16-oncology_biomarker_pipeline_en.md

---------

Co-authored-by: bugeki <[email protected]>
Co-authored-by: bugra <[email protected]>
Co-authored-by: Akar <[email protected]>
Co-authored-by: Vildan <[email protected]>

* 2024-09-16-oncology_biomarker_pipeline_en (#1480)

* Add model 2024-09-16-oncology_biomarker_pipeline_en

* Update 2024-09-16-oncology_biomarker_pipeline_en.md

* Add model 2024-09-16-explain_clinical_doc_cancer_type_en

* Update 2024-09-16-explain_clinical_doc_cancer_type_en.md

* Delete docs/_posts/akrztrk/2024-09-16-oncology_biomarker_pipeline_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>
Co-authored-by: Vildan <[email protected]>

* deleted md cards

* 2024-09-17-oncology_biomarker_pipeline_en (#1487)

* 2024-09-17-oncology_biomarker_pipeline_en (#1486)

* 2024-09-17-oncology_biomarker_pipeline_en (#1485)

* 2024-09-20-ner_deid_subentity_augmented_v2_en (#1496)

* 2024-09-24-clinical_deidentification_v2_wip_en (#1501)

* Add model 2024-09-24-clinical_deidentification_v2_wip_en

* Update 2024-09-24-clinical_deidentification_v2_wip_en.md

* Add model 2024-09-25-clinical_deidentification_docwise_wip_en

* Update 2024-09-24-clinical_deidentification_v2_wip_en.md

* Update 2024-09-25-clinical_deidentification_docwise_wip_en.md

* Update 2024-09-25-clinical_deidentification_docwise_wip_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-09-25-ner_deid_aipii_en (#1503)

* Add model 2024-09-25-ner_deid_aipii_en

* Update 2024-09-25-ner_deid_aipii_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-09-27-clinical_deidentification_v2_wip_en (#1505)

* Add model 2024-09-27-clinical_deidentification_v2_wip_en

* Update 2024-09-27-clinical_deidentification_v2_wip_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-09-27-explain_clinical_doc_sdoh_small_en (#1507)

* Add model 2024-09-27-explain_clinical_doc_sdoh_small_en

* Update 2024-09-27-explain_clinical_doc_sdoh_small_en.md

---------

Co-authored-by: Meryem1425 <[email protected]>
Co-authored-by: Vildan <[email protected]>

* 2024-09-27-explain_clinical_doc_sdoh_small_en (#1506)

* Add model 2024-09-27-explain_clinical_doc_sdoh_small_en

* Update 2024-09-27-explain_clinical_doc_sdoh_small_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-09-27-explain_clinical_doc_sdoh_small_en (#1508)

* Add model 2024-09-27-explain_clinical_doc_sdoh_small_en

* Update 2024-09-27-explain_clinical_doc_sdoh_small_en.md

---------

Co-authored-by: bugeki <[email protected]>
Co-authored-by: bugra <[email protected]>

* Add model 2024-09-29-email_matcher_en (#1512)

Co-authored-by: yigitgull <[email protected]>

* 2024-09-30-clinical_deidentification_v2_wip_en (#1516)

* Add model 2024-10-01-jsl_medm_q8_v1_en (#1517)

Co-authored-by: akrztrk <[email protected]>

* Add model 2024-10-01-jsl_meds_ner_q4_v2_en (#1518)

Co-authored-by: akrztrk <[email protected]>

* 2024-10-02-icd10cm_chronic_indicator_mapper_en (#1519)

* Add model 2024-10-02-icd10cm_chronic_indicator_mapper_en

* Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md

* Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md

* Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md

* Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md

* Update 2024-10-02-icd10cm_chronic_indicator_mapper_en.md

---------

Co-authored-by: bugeki <[email protected]>
Co-authored-by: bugra <[email protected]>

* 2024-10-02-clinical_deidentification_nameAugmented_v2_en (#1520)

* Add model 2024-10-02-clinical_deidentification_nameAugmented_v2_en

* Update 2024-10-02-clinical_deidentification_nameAugmented_v2_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-10-02-clinical_deidentification_nameAugmented_v2_en (#1521)

* Add model 2024-10-02-clinical_deidentification_nameAugmented_v2_en

* Update 2024-10-02-clinical_deidentification_nameAugmented_v2_en.md

* Update 2024-10-02-clinical_deidentification_nameAugmented_v2_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-10-03-clinical_deidentification_docwise_wip_en (#1522)

* Add model 2024-10-03-clinical_deidentification_docwise_wip_en

* Update 2024-10-03-clinical_deidentification_docwise_wip_en.md

* Add model 2024-10-03-clinical_deidentification_nameAugmented_v2_en

* Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md

* Add model 2024-10-03-clinical_deidentification_v2_wip_en

* Update 2024-10-03-clinical_deidentification_v2_wip_en.md

* Update 2024-10-03-clinical_deidentification_docwise_wip_en.md

* Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md

* Update 2024-10-03-clinical_deidentification_v2_wip_en.md

---------

Co-authored-by: Cabir40 <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-10-03-clinical_deidentification_docwise_wip_en (#1523)

* Add model 2024-10-03-clinical_deidentification_docwise_wip_en

* Update 2024-10-03-clinical_deidentification_docwise_wip_en.md

* Add model 2024-10-03-clinical_deidentification_nameAugmented_v2_en

* Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md

* Update 2024-10-03-clinical_deidentification_docwise_wip_en.md

* Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md

* Add model 2024-10-03-clinical_deidentification_v2_wip_en

* Update 2024-10-03-clinical_deidentification_v2_wip_en.md

---------

Co-authored-by: Meryem1425 <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-10-03-clinical_deidentification_docwise_wip_en (#1524)

* Add model 2024-10-03-clinical_deidentification_docwise_wip_en

* Update 2024-10-03-clinical_deidentification_docwise_wip_en.md

* Add model 2024-10-03-clinical_deidentification_nameAugmented_v2_en

* Update 2024-10-03-clinical_deidentification_nameAugmented_v2_en.md

* Update 2024-10-03-clinical_deidentification_docwise_wip_en.md

* Add model 2024-10-03-clinical_deidentification_v2_wip_en

* Update 2024-10-03-clinical_deidentification_v2_wip_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-10-04-clinical_deidentification_nameAugmented_v2_en (#1527)

* 2024-10-04-clinical_deidentification_nameAugmented_v2_en (#1526)

* 2024-10-04-clinical_deidentification_nameAugmented_v2_en (#1525)

* 2024-10-04-jsl_medm_q4_v1_en (#1529)

* 2024-10-04-jsl_meds_ner_zs_q4_v1_en (#1530)

* 2024-10-07-clinical_deidentification_nameAugmented_v2_en (#1535)

* 2024-10-07-sbiobertresolve_loinc_augmented_en (#1536)

* 2024-10-08-jsl_medm_q16_v2_en (#1538)

* 2024-10-08-loinc_resolver_pipeline_en (#1540)

* Add model 2024-10-08-loinc_resolver_pipeline_en

* Update 2024-10-08-loinc_resolver_pipeline_en.md

* Update 2024-10-08-loinc_resolver_pipeline_en.md

* Add model 2024-10-08-loinc_numeric_resolver_pipeline_en

* Update 2024-10-08-loinc_numeric_resolver_pipeline_en.md

---------

Co-authored-by: Meryem1425 <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-10-08-loinc_resolver_pipeline_en (#1539)

* 2024-10-14-explain_clinical_doc_oncology_en (#1547)

* 2024-10-14-explain_clinical_doc_oncology_en (#1548)

* 2024-10-14-explain_clinical_doc_oncology_en (#1549)

* 2024-10-17-ssn_parser_en (#1554)

* Add model 2024-10-17-ssn_parser_en

* Update 2024-10-17-ssn_parser_en.md

* Add model 2024-10-17-account_parser_en

* Update 2024-10-17-account_parser_en.md

* Add model 2024-10-18-dln_parser_en

* Update 2024-10-18-dln_parser_en.md

* Add model 2024-10-18-plate_parser_en

* Update 2024-10-18-plate_parser_en.md

* Add model 2024-10-18-vin_parser_en

* Update 2024-10-18-vin_parser_en.md

* Add model 2024-10-18-license_parser_en

* Update 2024-10-18-license_parser_en.md

* Add model 2024-10-18-age_parser_en

* Update 2024-10-18-age_parser_en.md

* Add model 2024-10-18-date_matcher_en

* Update 2024-10-18-date_matcher_en.md

* Add model 2024-10-18-phone_parser_en

* Update 2024-10-18-phone_parser_en.md

* Add model 2024-10-18-medical_record_parser_en

* Update 2024-10-18-medical_record_parser_en.md

---------

Co-authored-by: Meryem1425 <[email protected]>
Co-authored-by: Vildan <[email protected]>

* Add model 2024-10-18-country_matcher_en (#1555)

Co-authored-by: yigitgull <[email protected]>

* Add model 2024-10-18-clinical_deidentification_docwise_wip_en (#1556)

Co-authored-by: Cabir40 <[email protected]>

* Add model 2024-10-18-clinical_deidentification_docwise_wip_en (#1557)

Co-authored-by: Meryem1425 <[email protected]>

* Add model 2024-10-19-clinical_deidentification_docwise_wip_en (#1558)

Co-authored-by: Cabir40 <[email protected]>

* 2024-10-22-clinical_deidentification_docwise_wip_de (#1564)

* Add model 2024-10-22-clinical_deidentification_docwise_wip_de

* Update 2024-10-22-clinical_deidentification_docwise_wip_de.md

---------

Co-authored-by: Meryem1425 <[email protected]>
Co-authored-by: Vildan <[email protected]>

* 2024-10-15-jsl_medm_q16_v1_en (#1551)

* 2024-10-23-clinical_deidentification_v2_wip_en (#1568)

* 2024-10-23-clinical_deidentification_v2_wip_en (#1569)

* 2024-10-23-clinical_deidentification_v2_wip_en (#1570)

* 2024-10-24-clinical_deidentification_docwise_wip_de (#1572)

* 2024-10-24-clinical_deidentification_docwise_wip_de (#1571)

* Update 2024-10-22-clinical_deidentification_docwise_wip_de.md

* Update 2024-10-24-clinical_deidentification_docwise_wip_de.md

* Update 2024-10-24-clinical_deidentification_docwise_wip_de.md

* 2024-10-24-ner_deid_generic_docwise_de (#1573)

* 2024-11-04-clinical_deidentification_docwise_wip_de (#1580)

* Add model 2024-11-04-clinical_deidentification_docwise_wip_de

* Update 2024-11-04-clinical_deidentification_docwise_wip_de.md

* Update 2024-11-04-clinical_deidentification_docwise_wip_de.md

* Update 2024-11-04-clinical_deidentification_docwise_wip_de.md

* Update 2024-11-04-clinical_deidentification_docwise_wip_de.md

* Update 2024-11-04-clinical_deidentification_docwise_wip_de.md

---------

Co-authored-by: bugeki <[email protected]>
Co-authored-by: bugra <[email protected]>

* added new large model

* renamed MedMX

* 2024-11-04-clinical_deidentification_docwise_wip_de (#1582)

* Add model 2024-11-04-clinical_deidentification_docwise_wip_de

* Update 2024-11-04-clinical_deidentification_docwise_wip_de.md

---------

Co-authored-by: Meryem1425 <[email protected]>
Co-authored-by: bugra <[email protected]>

* 2024-11-04-clinical_deidentification_docwise_wip_de (#1581)

* Add model 2024-11-04-clinical_deidentification_docwise_wip_de

* Update 2024-11-04-clinical_deidentification_docwise_wip_de.md

* Update 2024-11-04-clinical_deidentification_docwise_wip_de.md

* Add model 2024-11-04-clinical_deidentification_docwise_wip_de

* Update 2024-11-04-clinical_deidentification_docwise_wip_de.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: bugra <[email protected]>

* 2024-11-06-clinical_deidentification_v2_wip_en (#1587)

* 2024-11-06-clinical_deidentification_v2_wip_en (#1586)

* 2024-11-06-clinical_deidentification_v2_wip_en (#1585)

* Add model 2024-11-10-contextual_assertion_family_en (#1590)

Co-authored-by: yigitgull <[email protected]>

* 2024-11-12-drug_action_treatment_mapper_en (#1591)

* 2024-11-19-medembed_base_rxnorm_augmented_en (#1610)

* Add model 2024-11-19-medembed_base_rxnorm_augmented_en

* Update 2024-11-19-medembed_base_rxnorm_augmented_en.md

* Update 2024-11-19-medembed_base_rxnorm_augmented_en.md

* Add model 2024-11-19-medmebed_large_rxnorm_augmented_en

* Update 2024-11-19-medmebed_large_rxnorm_augmented_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en (#1622)

* Add model 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en

* Update 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en.md

---------

Co-authored-by: Cabir40 <[email protected]>
Co-authored-by: Cabir C. <[email protected]>

* Update 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en.md

* Update 2024-11-27-zeroshot_ner_deid_subentity_merged_medium_en.md

* Add model 2024-11-27-clinical_deidentification_docwise_wip_v2_en (#1626)

* 2024-11-28-ner_deid_generic_docwise_de (#1627)

* 2024-11-28-snomed_term_resolver_pipeline_en (#1628)

* 2024-11-28-date_matcher_en (#1629)

* Add model 2024-11-28-date_matcher_en

* Update 2024-11-28-date_matcher_en.md

---------

Co-authored-by: Meryem1425 <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-11-27-zeroshot_ner_clinical_large_en (#1625)

* Add model 2024-11-27-zeroshot_ner_clinical_large_en

* Update 2024-11-27-zeroshot_ner_clinical_large_en.md

* Update 2024-11-27-zeroshot_ner_clinical_large_en.md

* Update 2024-11-27-zeroshot_ner_clinical_large_en.md

* Update 2024-11-27-zeroshot_ner_clinical_large_en.md

* Add model 2024-11-27-zeroshot_ner_clinical_medium_en

* Update 2024-11-27-zeroshot_ner_clinical_medium_en.md

* Update 2024-11-27-zeroshot_ner_clinical_large_en.md

* Update 2024-11-27-zeroshot_ner_clinical_medium_en.md

* Add model 2024-11-27-zeroshot_ner_oncology_medium_en

* Update 2024-11-27-zeroshot_ner_oncology_medium_en.md

* Add model 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en

* Add model 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en

* Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md

* Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md

* Update 2024-11-27-zeroshot_ner_oncology_medium_en.md

* Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md

* Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md

* Update 2024-11-27-zeroshot_ner_oncology_medium_en.md

* Update 2024-11-27-zeroshot_ner_oncology_medium_en.md

* Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md

* Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md

* Add model 2024-11-28-zeroshot_ner_oncology_large_en

* Update 2024-11-28-zeroshot_ner_oncology_large_en.md

* Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md

* Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>
Co-authored-by: bugra <[email protected]>

* Update 2024-11-28-zeroshot_ner_oncology_large_en.md

* Update 2024-11-28-zeroshot_ner_deid_generic_docwise_medium_en.md

* Update 2024-11-28-zeroshot_ner_deid_generic_docwise_large_en.md

* Update 2024-11-27-zeroshot_ner_oncology_medium_en.md

* Update 2024-11-27-zeroshot_ner_clinical_medium_en.md

* Update 2024-11-27-zeroshot_ner_clinical_large_en.md

* 2024-11-28-zeroshot_ner_generic_medium_en (#1630)

* Add model 2024-11-28-zeroshot_ner_generic_medium_en

* Add model 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en

* Update 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en.md

* Add model 2024-11-28-zeroshot_ner_generic_large_en

* Add model 2024-11-29-clinical_deidentification_docwise_wip_en

* Update 2024-11-29-clinical_deidentification_docwise_wip_en.md

* Add model 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en

* Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md

* Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md

* Add model 2024-11-29-clinical_deidentification_v2_wip_en

* Update 2024-11-29-clinical_deidentification_v2_wip_en.md

* Update 2024-11-29-clinical_deidentification_docwise_wip_en.md

* Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md

* Update 2024-11-29-zeroshot_ner_deid_subentity_docwise_large_en.md

* Update 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en.md

* Update 2024-11-28-zeroshot_ner_deid_subentity_docwise_medium_en.md

* Add model 2024-11-29-clinical_deidentification_docwise_wip_v2_en

* Update 2024-11-29-clinical_deidentification_docwise_wip_v2_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: bugra <[email protected]>
Co-authored-by: Akar <[email protected]>
Co-authored-by: Cabir C. <[email protected]>

* 2024-11-29-clinical_deidentification_docwise_wip_en (#1631)

* Add model 2024-11-29-clinical_deidentification_docwise_wip_en

* Update 2024-11-29-clinical_deidentification_docwise_wip_en.md

* Add model 2024-11-29-clinical_deidentification_v2_wip_en

* Update 2024-11-29-clinical_deidentification_v2_wip_en.md

* Update 2024-11-29-clinical_deidentification_docwise_wip_en.md

---------

Co-authored-by: Meryem1425 <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-11-29-clinical_deidentification_docwise_wip_en (#1632)

* Add model 2024-11-29-clinical_deidentification_docwise_wip_en

* Update 2024-11-29-clinical_deidentification_docwise_wip_en.md

* Add model 2024-11-29-clinical_deidentification_v2_wip_en

* Update 2024-11-29-clinical_deidentification_v2_wip_en.md

* Update 2024-11-29-clinical_deidentification_docwise_wip_en.md

* Add model 2024-11-29-clinical_deidentification_docwise_large_wip_de

* Add model 2024-11-29-clinical_deidentification_docwise_wip_de

* Update 2024-11-29-clinical_deidentification_docwise_wip_de.md

* Update 2024-11-29-clinical_deidentification_docwise_large_wip_de.md

---------

Co-authored-by: bugeki <[email protected]>
Co-authored-by: Akar <[email protected]>
Co-authored-by: bugra <[email protected]>

* 2024-11-29-clinical_deidentification_docwise_wip_v2_en (#1634)

* Add model 2024-11-29-clinical_deidentification_docwise_wip_v2_en

* Update 2024-11-29-clinical_deidentification_docwise_wip_v2_en.md

---------

Co-authored-by: bugeki <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-11-29-clinical_deidentification_docwise_wip_v2_en (#1633)

* Add model 2024-11-29-clinical_deidentification_docwise_wip_v2_en

* Update 2024-11-29-clinical_deidentification_docwise_wip_v2_en.md

---------

Co-authored-by: Meryem1425 <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-11-29-clinical_deidentification_docwise_wip_de (#1635)

* Add model 2024-11-29-clinical_deidentification_docwise_wip_de

* Add model 2024-11-29-clinical_deidentification_docwise_large_wip_de

---------

Co-authored-by: Meryem1425 <[email protected]>

* 2024-11-29-clinical_deidentification_docwise_large_wip_de (#1636)

* Add model 2024-11-29-clinical_deidentification_docwise_large_wip_de

* Add model 2024-11-29-clinical_deidentification_docwise_wip_de

---------

Co-authored-by: akrztrk <[email protected]>

* 2024-11-29-zeroshot_ner_vop_medium_en (#1637)

* Add model 2024-11-29-zeroshot_ner_vop_medium_en

* Update 2024-11-29-zeroshot_ner_vop_medium_en.md

* Add model 2024-11-30-zeroshot_ner_vop_large_en

* Update 2024-11-30-zeroshot_ner_vop_large_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-12-02-sbiobertresolve_umls_major_concepts_en (#1643)

* 2024-12-02-zeroshot_ner_ade_clinical_large_en (#1641)

* 2024-12-03-clinical_deidentification_docwise_medium_wip_en (#1646)

* 2024-12-03-clinical_deidentification_docwise_medium_wip_en (#1647)

* 2024-12-03-clinical_deidentification_docwise_medium_wip_en (#1649)

* 2024-12-04-ner_genes_phenotypes_wip_en (#1653)

* 2024-12-04-clinical_deidentification_zeroshot_large_en (#1656)

* 2024-12-04-clinical_deidentification_zeroshot_large_en (#1655)

* 2024-12-04-clinical_deidentification_zeroshot_large_en (#1654)

* 2024-12-05-sbiobertresolve_umls_drug_substance_en (#1657)

* 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en (#1667)

* Add model 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en

* Update 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en.md

* Add model 2024-12-13-zeroshot_ner_oncology_biomarker_large_en

* Update 2024-12-13-zeroshot_ner_oncology_biomarker_large_en.md

---------

Co-authored-by: Meryem1425 <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2024-12-06-biolordresolve_umls_general_concepts_en (#1660)

* Add model 2024-12-06-biolordresolve_umls_general_concepts_en

* Update 2024-12-06-biolordresolve_umls_general_concepts_en.md

* Update 2024-12-06-biolordresolve_umls_general_concepts_en.md

* Add model 2024-12-06-umls_clinical_drugs_mapper_en

* Update 2024-12-06-umls_clinical_drugs_mapper_en.md

* Add model 2024-12-09-umls_icd10cm_mapper_en

* Update 2024-12-09-umls_icd10cm_mapper_en.md

* Add model 2024-12-10-icd10cm_umls_mapper_en

* Update 2024-12-10-icd10cm_umls_mapper_en.md

* Add model 2024-12-10-umls_cpt_mapper_en

* update scala code

* update scala code

* update scala code

* update scala code

* Update 2024-12-10-umls_cpt_mapper_en.md

* Update 2024-12-10-umls_cpt_mapper_en.md

* Update 2024-12-06-biolordresolve_umls_general_concepts_en.md

* Update 2024-12-06-umls_clinical_drugs_mapper_en.md

* Update 2024-12-09-umls_icd10cm_mapper_en.md

* Update 2024-12-10-icd10cm_umls_mapper_en.md

* Update 2024-12-10-umls_cpt_mapper_en.md

* Update 2024-12-10-umls_cpt_mapper_en.md

* Add model 2024-12-10-cpt_umls_mapper_en

* Update 2024-12-10-cpt_umls_mapper_en.md

* Add model 2024-12-11-umls_rxnorm_mapper_en

* Update 2024-12-11-umls_rxnorm_mapper_en.md

* Add model 2024-12-11-rxnorm_umls_mapper_en

* Update 2024-12-11-rxnorm_umls_mapper_en.md

* Add model 2024-12-11-umls_snomed_mapper_en

* Update 2024-12-11-umls_snomed_mapper_en.md

* Update 2024-12-11-umls_snomed_mapper_en.md

* Add model 2024-12-11-snomed_umls_mapper_en

* Update 2024-12-11-snomed_umls_mapper_en.md

* Update 2024-12-10-umls_cpt_mapper_en.md

* Add model 2024-12-11-umls_loinc_mapper_en

* Update 2024-12-11-umls_loinc_mapper_en.md

* Add model 2024-12-11-loinc_umls_mapper_en

* Update 2024-12-11-loinc_umls_mapper_en.md

* Add model 2024-12-12-umls_mesh_mapper_en

* Update 2024-12-12-umls_mesh_mapper_en.md

* Update 2024-12-11-loinc_umls_mapper_en.md

* Add model 2024-12-12-mesh_umls_mapper_en

* Update 2024-12-12-mesh_umls_mapper_en.md

* Add model 2024-12-16-umls_disease_syndrome_mapper_en

* Update 2024-12-16-umls_disease_syndrome_mapper_en.md

* Add model 2024-12-17-zeroshot_ner_deid_subentity_merged_large_en

* Add model 2024-12-18-umls_drug_substance_mapper_en

* Update 2024-12-18-umls_drug_substance_mapper_en.md

* Add model 2024-12-18-umls_clinical_findings_mapper_en

* Update 2024-12-18-umls_clinical_findings_mapper_en.md

* Add model 2024-12-18-umls_major_concepts_mapper_en

* Update 2024-12-18-umls_major_concepts_mapper_en.md

* Update 2024-12-12-umls_mesh_mapper_en.md

* Add model 2024-12-19-umls_loinc_mapper_en

* Update 2024-12-19-umls_loinc_mapper_en.md

* Delete docs/_posts/akrztrk/2024-12-11-umls_loinc_mapper_en.md

* Add model 2024-12-19-loinc_umls_mapper_en

* Update 2024-12-19-loinc_umls_mapper_en.md

* Delete docs/_posts/akrztrk/2024-12-11-loinc_umls_mapper_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>

* Update 2024-12-17-zeroshot_ner_deid_subentity_merged_large_en.md

* Update 2024-12-13-zeroshot_ner_oncology_biomarker_large_en.md

* Update 2024-12-13-zeroshot_ner_oncology_biomarker_medium_en.md

* 2024-12-19-medication_resolver_transform_pipeline_en (#1671)

* 2024-12-19-medication_resolver_transform_pipeline_en (#1672)

* 2024-12-19-medication_resolver_transform_pipeline_en (#1673)

* 2025-01-01-zeroshot_ner_jsl_medium_en (#1680)

* Add model 2025-01-01-zeroshot_ner_jsl_medium_en

* Update 2025-01-01-zeroshot_ner_jsl_medium_en.md

* Add model 2025-01-01-zeroshot_ner_jsl_large_en

* Update 2025-01-01-zeroshot_ner_jsl_large_en.md

* Update 2025-01-01-zeroshot_ner_jsl_medium_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2025-01-03-clinical_deidentification_multi_mode_output_en (#1681)

* Add model 2025-01-03-clinical_deidentification_multi_mode_output_en

* Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md

* Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md

* Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md

* Add model 2025-01-06-clinical_deidentification_light_en

* Update 2025-01-06-clinical_deidentification_light_en.md

---------

Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2025-01-03-clinical_deidentification_multi_mode_output_en (#1682)

* Add model 2025-01-03-clinical_deidentification_multi_mode_output_en

* Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md

* Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md

* Add model 2025-01-06-clinical_deidentification_light_en

* Update 2025-01-06-clinical_deidentification_light_en.md

---------

Co-authored-by: gokhanturer <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2025-01-03-clinical_deidentification_multi_mode_output_en (#1683)

* Add model 2025-01-03-clinical_deidentification_multi_mode_output_en

* Update 2025-01-03-clinical_deidentification_multi_mode_output_en.md

* Add model 2025-01-06-clinical_deidentification_light_en

* Update 2025-01-06-clinical_deidentification_light_en.md

* Add model 2025-01-06-zeroshot_ner_sdoh_medium_en

* Update 2025-01-06-zeroshot_ner_sdoh_medium_en.md

* Add model 2025-01-07-zeroshot_ner_sdoh_large_en

* Update 2025-01-07-zeroshot_ner_sdoh_large_en.md

---------

Co-authored-by: Meryem1425 <[email protected]>
Co-authored-by: Akar <[email protected]>
Co-authored-by: Vildan <[email protected]>

* 2025-01-11-ner_genes_phenotypes_en (#1684)

* Add model 2025-01-11-ner_genes_phenotypes_en

* Update 2025-01-11-ner_genes_phenotypes_en.md

* Update 2025-01-11-ner_genes_phenotypes_en.md

---------

Co-authored-by: gpirge <[email protected]>
Co-authored-by: gursev.pirge <[email protected]>
Co-authored-by: Akar <[email protected]>

* 2025-01-13-ner_cancer_types_en (#1686)

* 2025-01-14-sbiobertresolve_HPO_en (#1687)

* Add model 2025-01-14-sbiobertresolve_HPO_en

* Update 2025-01-14-sbiobertresolve_HPO_en.md

* Update 2025-01-14-sbiobertresolve_HPO_en.md

* Update 2025-01-14-sbiobertresolve_HPO_en.md

* Update 2025-01-14-sbiobertresolve_HPO_en.md

* Add model 2025-01-15-ner_oncology_biomarker_docwise_en

* Update 2025-01-15-ner_oncology_biomarker_docwise_en.md

* Update 2025-01-15-ner_oncology_biomarker_docwise_en.md

---------

Co-authored-by: Meryem1425 <[email protected]>
Co-authored-by: Vildan <[email protected]>

---------

Co-authored-by: jsl-models <[email protected]>
Co-authored-by: ahmet-mesut <[email protected]>
Co-authored-by: bugra <[email protected]>
Co-authored-by: gokhanturer <[email protected]>
Co-authored-by: akrztrk <[email protected]>
Co-authored-by: Gökhan <[email protected]>
Co-authored-by: Akar <[email protected]>
Co-authored-by: bugeki <[email protected]>
Co-authored-by: muhammetsnts <[email protected]>
Co-authored-by: kolia1985 <[email protected]>
Co-authored-by: Meryem1425 <[email protected]>
Co-authored-by: Vildan <[email protected]>
Co-authored-by: yigitgull <[email protected]>
Co-authored-by: yigitgull <[email protected]>
Co-authored-by: Ahmetemintek <[email protected]>
Co-authored-by: Mehmet Butgul <[email protected]>
Co-authored-by: gpirge <[email protected]>
Co-authored-by: gursev.pirge <[email protected]>

docs/_posts/Ahmetemintek/2024-12-05-sbiobertresolve_umls_clinical_drugs_en.md

@@ -0,0 +1,209 @@
+---
+layout: model
+title: Sentence Entity Resolver for UMLS CUI Codes (Clinical Drug)
+author: John Snow Labs
+name: sbiobertresolve_umls_clinical_drugs
+date: 2024-12-05
+tags: [en, licensed, clinical, entity_resolution, umls]
+task: Entity Resolution
+language: en
+edition: Healthcare NLP 5.5.1
+spark_version: 3.0
+supported: true
+annotator: SentenceEntityResolverModel
+article_header:
+  type: cover
+use_language_switcher: "Python-Scala-Java"
+---
+
+## Description
+
+This model maps drug entities to UMLS CUI codes. It is trained on 2024AB release of the Unified Medical Language System (UMLS) dataset. The complete dataset has 127 different categories, and this model is trained on the "Clinical Drug" category using `sbiobert_base_cased_mli` embeddings.
+
+## Predicted Entities
+
+`UMLS CUI codes for clinical drugs`
+
+{:.btn-box}
+<button class="button button-orange" disabled>Live Demo</button>
+[Open in Colab](https://colab.research.google.com/github/JohnSnowLabs/spark-nlp-workshop/blob/master/tutorials/Certification_Trainings/Healthcare/3.Clinical_Entity_Resolvers.ipynb){:.button.button-orange.button-orange-trans.co.button-icon}
+[Download](https://s3.amazonaws.com/auxdata.johnsnowlabs.com/clinical/models/sbiobertresolve_umls_clinical_drugs_en_5.5.1_3.0_1733414421700.zip){:.button.button-orange.button-orange-trans.arr.button-icon.hidden}
+[Copy S3 URI](s3://auxdata.johnsnowlabs.com/clinical/models/sbiobertresolve_umls_clinical_drugs_en_5.5.1_3.0_1733414421700.zip){:.button.button-orange.button-orange-trans.button-icon.button-copy-s3}
+
+## How to use
+
+
+
+<div class="tabs-box" markdown="1">
+{% include programmingLanguageSelectScalaPythonNLU.html %}
+```python
+document_assembler = DocumentAssembler()\
+      .setInputCol('text')\
+      .setOutputCol('document')
+
+sentenceDetector = SentenceDetectorDLModel.pretrained("sentence_detector_dl_healthcare","en","clinical/models")\
+     .setInputCols(["document"])\
+     .setOutputCol("sentence")
+
+tokenizer = Tokenizer()\
+      .setInputCols("sentence")\
+      .setOutputCol("token")
+
+word_embeddings = WordEmbeddingsModel.pretrained("embeddings_clinical", "en", "clinical/models")\
+      .setInputCols(["sentence", "token"])\
+      .setOutputCol("embeddings")
+
+ner_model = MedicalNerModel.pretrained("ner_posology_greedy", "en", "clinical/models")\
+    .setInputCols(["sentence", "token", "embeddings"])\
+    .setOutputCol("posology_ner")
+
+ner_model_converter = NerConverterInternal()\
+    .setInputCols(["sentence", "token", "posology_ner"])\
+    .setOutputCol("posology_ner_chunk")\
+    .setWhiteList(["DRUG"])
+
+chunk2doc = Chunk2Doc().setInputCols("posology_ner_chunk").setOutputCol("ner_chunk_doc")
+
+sbert_embedder = BertSentenceEmbeddings.pretrained("sbiobert_base_cased_mli","en","clinical/models")\
+     .setInputCols(["ner_chunk_doc"])\
+     .setOutputCol("sbert_embeddings")\
+     .setCaseSensitive(False)
+
+resolver = SentenceEntityResolverModel.pretrained("sbiobertresolve_umls_clinical_drugs","en", "clinical/models") \
+     .setInputCols(["sbert_embeddings"]) \
+     .setOutputCol("resolution")\
+     .setDistanceFunction("EUCLIDEAN")
+
+pipeline = Pipeline(stages = [document_assembler, sentenceDetector, tokenizer, word_embeddings, ner_model, ner_model_converter, chunk2doc, sbert_embedder, resolver])
+
+data = spark.createDataFrame([["""She was immediately given hydrogen peroxide 30 mg to treat the infection on her leg, and has been advised Neosporin Cream for 5 days. She has a history of taking magnesium hydroxide 100mg/1ml and metformin 1000 mg."""]]).toDF("text")
+
+results = pipeline.fit(data).transform(data)
+```
+
+{:.jsl-block}
+```python
+document_assembler = nlp.DocumentAssembler()\
+      .setInputCol('text')\
+      .setOutputCol('document')
+
+sentenceDetector = nlp.SentenceDetectorDLModel.pretrained("sentence_detector_dl_healthcare","en","clinical/models")\
+     .setInputCols(["document"])\
+     .setOutputCol("sentence")
+
+tokenizer = nlp.Tokenizer()\
+      .setInputCols("sentence")\
+      .setOutputCol("token")
+
+word_embeddings = nlp.WordEmbeddingsModel.pretrained("embeddings_clinical", "en", "clinical/models")\
+      .setInputCols(["sentence", "token"])\
+      .setOutputCol("embeddings")
+
+ner_model = medical.NerModel.pretrained("ner_posology_greedy", "en", "clinical/models")\
+    .setInputCols(["sentence", "token", "embeddings"])\
+    .setOutputCol("posology_ner")
+
+ner_model_converter = medical.NerConverterInternal()\
+    .setInputCols(["sentence", "token", "posology_ner"])\
+    .setOutputCol("posology_ner_chunk")\
+    .setWhiteList(["DRUG"])
+
+chunk2doc = medical.Chunk2Doc().setInputCols("posology_ner_chunk").setOutputCol("ner_chunk_doc")
+
+sbert_embedder = nlp.BertSentenceEmbeddings.pretrained("sbiobert_base_cased_mli","en","clinical/models")\
+     .setInputCols(["ner_chunk_doc"])\
+     .setOutputCol("sbert_embeddings")\
+     .setCaseSensitive(False)
+
+resolver = medical.SentenceEntityResolverModel.pretrained("sbiobertresolve_umls_clinical_drugs","en", "clinical/models") \
+     .setInputCols(["sbert_embeddings"]) \
+     .setOutputCol("resolution")\
+     .setDistanceFunction("EUCLIDEAN")
+
+pipeline = nlp.Pipeline(stages = [document_assembler, sentenceDetector, tokenizer, word_embeddings, ner_model, ner_model_converter, chunk2doc, sbert_embedder, resolver])
+
+data = spark.createDataFrame([["""She was immediately given hydrogen peroxide 30 mg to treat the infection on her leg, and has been advised Neosporin Cream for 5 days. She has a history of taking magnesium hydroxide 100mg/1ml and metformin 1000 mg."""]]).toDF("text")
+
+results = pipeline.fit(data).transform(data)
+```
+```scala
+val document_assembler = new DocumentAssembler()
+      .setInputCol("text")
+      .setOutputCol("document")
+
+val sentence_detector = new SentenceDetectorDLModel.pretrained("sentence_detector_dl_healthcare","en","clinical/models")\
+     .setInputCols(Array("document"))\
+     .setOutputCol("sentence")
+
+val tokenizer = new Tokenizer()
+      .setInputCols("sentence")
+      .setOutputCol("token")
+
+val word_embeddings = WordEmbeddingsModel
+      .pretrained("embeddings_clinical", "en", "clinical/models")
+      .setInputCols(Array("sentence", "token"))
+      .setOutputCol("embeddings")
+
+val ner_model = MedicalNerModel
+      .pretrained("ner_posology_greedy", "en", "clinical/models")
+      .setInputCols(Array("sentence", "token", "embeddings"))
+      .setOutputCol("posology_ner")
+
+val ner_model_converter = new NerConverterInternal()
+      .setInputCols(Array("sentence", "token", "posology_ner"))
+      .setOutputCol("posology_ner_chunk")
+      .setWhiteList(Array("DRUG"))
+
+val chunk2doc = Chunk2Doc().setInputCols("posology_ner_chunk").setOutputCol("ner_chunk_doc")
+
+val sbert_embedder = BertSentenceEmbeddings.pretrained("sbiobert_base_cased_mli", "en","clinical/models")
+      .setInputCols(Array("ner_chunk_doc"))
+      .setOutputCol("sbert_embeddings")
+      .setCaseSensitive(False)
+
+val resolver = SentenceEntityResolverModel
+      .pretrained("sbiobertresolve_umls_clinical_drugs", "en", "clinical/models") 
+      .setInputCols(Array("sbert_embeddings")) 
+      .setOutputCol("resolution")
+      .setDistanceFunction("EUCLIDEAN")
+
+val pipeline = new Pipeline().setStages(Array(document_assembler, sentence_detector, tokenizer, word_embeddings, ner_model, ner_model_converter, chunk2doc, sbert_embedder, resolver))
+
+val data = Seq("She was immediately given hydrogen peroxide 30 mg to treat the infection on her leg, and has been advised Neosporin Cream for 5 days. She has a history of taking magnesium hydroxide 100mg/1ml and metformin 1000 mg.").toDF("text") 
+
+val res = pipeline.fit(data).transform(data)
+```
+</div>
+
+## Results
+
+```bash
++-----------------------------+------+---------+--------------------------+------------------------------------------------------------+------------------------------------------------------------+
+|                    ner_chunk|entity|umls_code|               description|                                               all_k_results|                                           all_k_resolutions|
++-----------------------------+------+---------+--------------------------+------------------------------------------------------------+------------------------------------------------------------+
+|      hydrogen peroxide 30 mg|  DRUG| C1126248|hydrogen peroxide 30 mg/ml|C1126248:::C0304655:::C1605252:::C0304656:::C1154260:::C2...|hydrogen peroxide 30 mg/ml:::hydrogen peroxide solution 3...|
+|              Neosporin Cream|  DRUG| C0132149|           neosporin cream|C0132149:::C4722788:::C0704071:::C0698988:::C1252084:::C3...|neosporin cream:::neomycin sulfate cream:::neosporin topi...|
+|magnesium hydroxide 100mg/1ml|  DRUG| C1134402|magnesium hydroxide 100 mg|C1134402:::C1126785:::C4317023:::C4051486:::C4047137:::C1...|magnesium hydroxide 100 mg:::magnesium hydroxide 100 mg/m...|
+|            metformin 1000 mg|  DRUG| C0987664|         metformin 1000 mg|C0987664:::C2719784:::C0978482:::C2719786:::C4282269:::C2...|metformin 1000 mg:::metformin hydrochloride 1000 mg:::met...|
++-----------------------------+------+---------+--------------------------+------------------------------------------------------------+------------------------------------------------------------+
+
+```
+
+{:.model-param}
+## Model Information
+
+{:.table-model}
+|---|---|
+|Model Name:|sbiobertresolve_umls_clinical_drugs|
+|Compatibility:|Healthcare NLP 5.5.1+|
+|License:|Licensed|
+|Edition:|Official|
+|Input Labels:|[sentence_embeddings]|
+|Output Labels:|[umls_code]|
+|Language:|en|
+|Size:|1.9 GB|
+|Case sensitive:|false|
+
+## References
+
+Trained on the Clinical Drug concepts of the 2024AB release of the Unified Medical Language System® (UMLS) Knowledge Sources: https://www.nlm.nih.gov/research/umls/index.html