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@JinmiaoChenLab

Jinmiao Chen's Lab

single cell and AI for precision immunology

Popular repositories Loading

  1. GraphST GraphST Public

    Python 109 15

  2. Batch-effect-removal-benchmarking Batch-effect-removal-benchmarking Public

    A benchmark of batch-effect correction methods for single-cell RNA sequencing data

    Jupyter Notebook 74 47

  3. cytofkit cytofkit Public

    cytofkit: an integrated flow/mass cytometry data analysis pipeline

    R 57 27

  4. ezSingleCell2 ezSingleCell2 Public

    R 54 7

  5. SEDR SEDR Public

    Python 53 10

  6. SpatialGlue SpatialGlue Public

    SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.

    Python 51 9

Repositories

Showing 10 of 36 repositories
  • NNI_paper Public
    R 0 0 0 0 Updated Mar 1, 2025
  • SpaMosaic Public
    Jupyter Notebook 1 MIT 2 0 0 Updated Dec 11, 2024
  • DISCOtoolkit_py Public

    Python version of DISCO toolkit

    Python 13 1 2 0 Updated Nov 21, 2024
  • SEDR Public
    Python 53 MIT 10 5 0 Updated Nov 6, 2024
  • FastIntegration Public

    FastIntegrate integrates thousands of scRNA-seq datasets and outputs batch-corrected values for downstream analysis

    R 23 4 2 0 Updated Oct 25, 2024
  • DISCOtoolkit Public
    R 28 4 1 0 Updated Oct 24, 2024
  • SpatialGlue Public

    SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.

    Python 51 AGPL-3.0 9 19 0 Updated Jun 24, 2024
  • SpatialGlue_tutorials Public

    The tutorial is to show how to apply SpatialGlue to integrate spatial multi-omics data to decipher tissue heterogeneity.

    Python 1 0 0 0 Updated Jun 22, 2024
  • SpatialGlue_3M Public

    Extended version of SpatialGlue for integration of spatial triplet modality data.

    Python 5 0 0 0 Updated Jun 22, 2024
  • R 1 0 0 0 Updated May 3, 2024

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